Gene : AT3G28480 A. thaliana TAIR10
Defline:  (1 of 3) PTHR10869//PTHR10869:SF55 - PROLYL 4-HYDROXYLASE ALPHA SUBUNIT // OXOGLUTARATE/IRON-DEPENDENT OXYGENASE Genomic Order:  3016
Name:  ? AT3G28480 Secondary Identifier:  ? PAC:19662088
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G28480 0.5kb upstream 0.5kb upstream 2856 true Chr3: 10676033-10678888 Arabidopsis thaliana
AT3G28480 0.5kb upstream 0.5kb upstream 500 false Chr3: 10678389-10678888 Arabidopsis thaliana
AT3G28480 0.5kb downstream 0.5kb downstream 2856 true Chr3: 10675533-10678388 Arabidopsis thaliana
AT3G28480 0.5kb downstream 0.5kb downstream 500 false Chr3: 10675533-10676032 Arabidopsis thaliana
AT3G28480 1.0kb upstream 1.0kb upstream 3356 true Chr3: 10676033-10679388 Arabidopsis thaliana
AT3G28480 1.0kb upstream 1.0kb upstream 1000 false Chr3: 10678389-10679388 Arabidopsis thaliana
AT3G28480 1.0kb downstream 1.0kb downstream 3356 true Chr3: 10675033-10678388 Arabidopsis thaliana
AT3G28480 1.0kb downstream 1.0kb downstream 1000 false Chr3: 10675033-10676032 Arabidopsis thaliana
AT3G28480 2.0kb upstream 2.0kb upstream 4356 true Chr3: 10676033-10680388 Arabidopsis thaliana
AT3G28480 2.0kb upstream 2.0kb upstream 2000 false Chr3: 10678389-10680388 Arabidopsis thaliana
AT3G28480 2.0kb downstream 2.0kb downstream 4356 true Chr3: 10674033-10678388 Arabidopsis thaliana
AT3G28480 2.0kb downstream 2.0kb downstream 2000 false Chr3: 10674033-10676032 Arabidopsis thaliana
AT3G28480 5.0kb upstream 5.0kb upstream 7356 true Chr3: 10676033-10683388 Arabidopsis thaliana
AT3G28480 5.0kb upstream 5.0kb upstream 5000 false Chr3: 10678389-10683388 Arabidopsis thaliana
AT3G28480 5.0kb downstream 5.0kb downstream 7356 true Chr3: 10671033-10678388 Arabidopsis thaliana
AT3G28480 5.0kb downstream 5.0kb downstream 5000 false Chr3: 10671033-10676032 Arabidopsis thaliana
AT3G28480 10.0kb upstream 10.0kb upstream 12356 true Chr3: 10676033-10688388 Arabidopsis thaliana
AT3G28480 10.0kb upstream 10.0kb upstream 10000 false Chr3: 10678389-10688388 Arabidopsis thaliana
AT3G28480 10.0kb downstream 10.0kb downstream 12356 true Chr3: 10666033-10678388 Arabidopsis thaliana
AT3G28480 10.0kb downstream 10.0kb downstream 10000 false Chr3: 10666033-10676032 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375567 5261 Brassicaceae View MSA
123833866 5264 Brassicales-Malvales View MSA
124336948 5266 SBM View MSA
124247832 5268 Malvidae View MSA
124068610 5270 Rosid View MSA
123740803 5271 Pentapetalae View MSA
122792927 5272 Eudicot View MSA
122045302 5273 Angiosperm View MSA
121349816 5274 Embryophyte View MSA
123428732 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.6       High
cufflinks 5.977        
cufflinks 5.592        
cufflinks 6.104        
cufflinks 6.848        
cufflinks 6.423        

0 Strain