Gene : CARA A. thaliana TAIR10
Primary Identifier:  ? AT3G27740 Defline:  (1 of 1) K01956 - carbamoyl-phosphate synthase small subunit (carA, CPA1)
Genomic Order:  2935 Name:  ? AT3G27740
Secondary Identifier:  ? PAC:19664043
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana ARGSYNBSUB-PWY Arabidopsis thaliana pathologic  
Athaliana ARGSYN-PWY Arabidopsis thaliana pathologic  
Athaliana CITRULBIO-PWY Arabidopsis thaliana pathologic  
Athaliana GLUTAMINDEG-PWY Arabidopsis thaliana pathologic  
Athaliana PWY0-162 Arabidopsis thaliana pathologic  
Athaliana PWY-4984 Arabidopsis thaliana pathologic  
Athaliana PWY-5686 Arabidopsis thaliana pathologic  
Athaliana PWY-7211 Arabidopsis thaliana pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G27740 0.5kb upstream 0.5kb upstream 3106 true Chr3: 10281261-10284366 Arabidopsis thaliana
AT3G27740 0.5kb upstream 0.5kb upstream 500 false Chr3: 10283867-10284366 Arabidopsis thaliana
AT3G27740 0.5kb downstream 0.5kb downstream 3106 true Chr3: 10280761-10283866 Arabidopsis thaliana
AT3G27740 0.5kb downstream 0.5kb downstream 500 false Chr3: 10280761-10281260 Arabidopsis thaliana
AT3G27740 1.0kb upstream 1.0kb upstream 3606 true Chr3: 10281261-10284866 Arabidopsis thaliana
AT3G27740 1.0kb upstream 1.0kb upstream 1000 false Chr3: 10283867-10284866 Arabidopsis thaliana
AT3G27740 1.0kb downstream 1.0kb downstream 3606 true Chr3: 10280261-10283866 Arabidopsis thaliana
AT3G27740 1.0kb downstream 1.0kb downstream 1000 false Chr3: 10280261-10281260 Arabidopsis thaliana
AT3G27740 2.0kb upstream 2.0kb upstream 4606 true Chr3: 10281261-10285866 Arabidopsis thaliana
AT3G27740 2.0kb upstream 2.0kb upstream 2000 false Chr3: 10283867-10285866 Arabidopsis thaliana
AT3G27740 2.0kb downstream 2.0kb downstream 4606 true Chr3: 10279261-10283866 Arabidopsis thaliana
AT3G27740 2.0kb downstream 2.0kb downstream 2000 false Chr3: 10279261-10281260 Arabidopsis thaliana
AT3G27740 5.0kb upstream 5.0kb upstream 7606 true Chr3: 10281261-10288866 Arabidopsis thaliana
AT3G27740 5.0kb upstream 5.0kb upstream 5000 false Chr3: 10283867-10288866 Arabidopsis thaliana
AT3G27740 5.0kb downstream 5.0kb downstream 7606 true Chr3: 10276261-10283866 Arabidopsis thaliana
AT3G27740 5.0kb downstream 5.0kb downstream 5000 false Chr3: 10276261-10281260 Arabidopsis thaliana
AT3G27740 10.0kb upstream 10.0kb upstream 12606 true Chr3: 10281261-10293866 Arabidopsis thaliana
AT3G27740 10.0kb upstream 10.0kb upstream 10000 false Chr3: 10283867-10293866 Arabidopsis thaliana
AT3G27740 10.0kb downstream 10.0kb downstream 12606 true Chr3: 10271261-10283866 Arabidopsis thaliana
AT3G27740 10.0kb downstream 10.0kb downstream 10000 false Chr3: 10271261-10281260 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372919 5261 Brassicaceae View MSA
123839532 5264 Brassicales-Malvales View MSA
124338612 5266 SBM View MSA
124252256 5268 Malvidae View MSA
124069141 5270 Rosid View MSA
123739104 5271 Pentapetalae View MSA
122788005 5272 Eudicot View MSA
122046797 5273 Angiosperm View MSA
121347244 5274 Embryophyte View MSA
123423822 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.047        
cufflinks 12.284       Low
cufflinks 14.585        
cufflinks 12.6        
cufflinks 13.207        
cufflinks 15.029       High

0 Strain