Gene : RST1 A. thaliana TAIR10
Primary Identifier:  ? AT3G27670 Defline:  (1 of 1) PTHR16212:SF4 - FOCADHESIN
Genomic Order:  2928 Name:  ? AT3G27670
Secondary Identifier:  ? PAC:19662800
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G27670 0.5kb upstream 0.5kb upstream 8660 true Chr3: 10244634-10253293 Arabidopsis thaliana
AT3G27670 0.5kb upstream 0.5kb upstream 500 false Chr3: 10244634-10245133 Arabidopsis thaliana
AT3G27670 0.5kb downstream 0.5kb downstream 8660 true Chr3: 10245134-10253793 Arabidopsis thaliana
AT3G27670 0.5kb downstream 0.5kb downstream 500 false Chr3: 10253294-10253793 Arabidopsis thaliana
AT3G27670 1.0kb upstream 1.0kb upstream 9160 true Chr3: 10244134-10253293 Arabidopsis thaliana
AT3G27670 1.0kb upstream 1.0kb upstream 1000 false Chr3: 10244134-10245133 Arabidopsis thaliana
AT3G27670 1.0kb downstream 1.0kb downstream 9160 true Chr3: 10245134-10254293 Arabidopsis thaliana
AT3G27670 1.0kb downstream 1.0kb downstream 1000 false Chr3: 10253294-10254293 Arabidopsis thaliana
AT3G27670 2.0kb upstream 2.0kb upstream 10160 true Chr3: 10243134-10253293 Arabidopsis thaliana
AT3G27670 2.0kb upstream 2.0kb upstream 2000 false Chr3: 10243134-10245133 Arabidopsis thaliana
AT3G27670 2.0kb downstream 2.0kb downstream 10160 true Chr3: 10245134-10255293 Arabidopsis thaliana
AT3G27670 2.0kb downstream 2.0kb downstream 2000 false Chr3: 10253294-10255293 Arabidopsis thaliana
AT3G27670 5.0kb upstream 5.0kb upstream 13160 true Chr3: 10240134-10253293 Arabidopsis thaliana
AT3G27670 5.0kb upstream 5.0kb upstream 5000 false Chr3: 10240134-10245133 Arabidopsis thaliana
AT3G27670 5.0kb downstream 5.0kb downstream 13160 true Chr3: 10245134-10258293 Arabidopsis thaliana
AT3G27670 5.0kb downstream 5.0kb downstream 5000 false Chr3: 10253294-10258293 Arabidopsis thaliana
AT3G27670 10.0kb upstream 10.0kb upstream 18160 true Chr3: 10235134-10253293 Arabidopsis thaliana
AT3G27670 10.0kb upstream 10.0kb upstream 10000 false Chr3: 10235134-10245133 Arabidopsis thaliana
AT3G27670 10.0kb downstream 10.0kb downstream 18160 true Chr3: 10245134-10263293 Arabidopsis thaliana
AT3G27670 10.0kb downstream 10.0kb downstream 10000 false Chr3: 10253294-10263293 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365602 5261 Brassicaceae View MSA
123830481 5264 Brassicales-Malvales View MSA
124342414 5266 SBM View MSA
124247658 5268 Malvidae View MSA
124073528 5270 Rosid View MSA
123737254 5271 Pentapetalae View MSA
122792826 5272 Eudicot View MSA
122044820 5273 Angiosperm View MSA
121344294 5274 Embryophyte View MSA
123424915 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.673       Low
cufflinks 5.399        
cufflinks 4.592       Low
cufflinks 6.016       High
cufflinks 5.117        
cufflinks 5.543        

0 Strain