Gene : LBD25 A. thaliana TAIR10
Primary Identifier:  ? AT3G27650 Defline:  (1 of 1) PTHR31301//PTHR31301:SF12 - FAMILY NOT NAMED // LOB DOMAIN-CONTAINING PROTEIN 25
Genomic Order:  2926 Name:  ? AT3G27650
Secondary Identifier:  ? PAC:19662399
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G27650 0.5kb upstream 0.5kb upstream 2566 true Chr3: 10238046-10240611 Arabidopsis thaliana
AT3G27650 0.5kb upstream 0.5kb upstream 500 false Chr3: 10238046-10238545 Arabidopsis thaliana
AT3G27650 0.5kb downstream 0.5kb downstream 2566 true Chr3: 10238546-10241111 Arabidopsis thaliana
AT3G27650 0.5kb downstream 0.5kb downstream 500 false Chr3: 10240612-10241111 Arabidopsis thaliana
AT3G27650 1.0kb upstream 1.0kb upstream 3066 true Chr3: 10237546-10240611 Arabidopsis thaliana
AT3G27650 1.0kb upstream 1.0kb upstream 1000 false Chr3: 10237546-10238545 Arabidopsis thaliana
AT3G27650 1.0kb downstream 1.0kb downstream 3066 true Chr3: 10238546-10241611 Arabidopsis thaliana
AT3G27650 1.0kb downstream 1.0kb downstream 1000 false Chr3: 10240612-10241611 Arabidopsis thaliana
AT3G27650 2.0kb upstream 2.0kb upstream 4066 true Chr3: 10236546-10240611 Arabidopsis thaliana
AT3G27650 2.0kb upstream 2.0kb upstream 2000 false Chr3: 10236546-10238545 Arabidopsis thaliana
AT3G27650 2.0kb downstream 2.0kb downstream 4066 true Chr3: 10238546-10242611 Arabidopsis thaliana
AT3G27650 2.0kb downstream 2.0kb downstream 2000 false Chr3: 10240612-10242611 Arabidopsis thaliana
AT3G27650 5.0kb upstream 5.0kb upstream 7066 true Chr3: 10233546-10240611 Arabidopsis thaliana
AT3G27650 5.0kb upstream 5.0kb upstream 5000 false Chr3: 10233546-10238545 Arabidopsis thaliana
AT3G27650 5.0kb downstream 5.0kb downstream 7066 true Chr3: 10238546-10245611 Arabidopsis thaliana
AT3G27650 5.0kb downstream 5.0kb downstream 5000 false Chr3: 10240612-10245611 Arabidopsis thaliana
AT3G27650 10.0kb upstream 10.0kb upstream 12066 true Chr3: 10228546-10240611 Arabidopsis thaliana
AT3G27650 10.0kb upstream 10.0kb upstream 10000 false Chr3: 10228546-10238545 Arabidopsis thaliana
AT3G27650 10.0kb downstream 10.0kb downstream 12066 true Chr3: 10238546-10250611 Arabidopsis thaliana
AT3G27650 10.0kb downstream 10.0kb downstream 10000 false Chr3: 10240612-10250611 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122330061 5261 Brassicaceae Singleton cluster - no MSA
123839079 5264 Brassicales-Malvales View MSA
124339115 5266 SBM View MSA
124244636 5268 Malvidae View MSA
124070294 5270 Rosid View MSA
123752210 5271 Pentapetalae View MSA
122796223 5272 Eudicot View MSA
122048133 5273 Angiosperm View MSA
121350574 5274 Embryophyte View MSA
123381803 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.995        
cufflinks 4.368        
cufflinks 0.812        
cufflinks 3.392        
cufflinks 0.644       Low
cufflinks 4.377        

0 Strain