Gene : AT3G27680 A. thaliana TAIR10
Defline:  (1 of 25) PTHR31232//PTHR31232:SF2 - FAMILY NOT NAMED // GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MDJ14-RELATED Genomic Order:  2929
Name:  ? AT3G27680 Secondary Identifier:  ? PAC:19660839
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G27680 0.5kb upstream 0.5kb upstream 905 true Chr3: 10254886-10255790 Arabidopsis thaliana
AT3G27680 0.5kb upstream 0.5kb upstream 500 false Chr3: 10255291-10255790 Arabidopsis thaliana
AT3G27680 0.5kb downstream 0.5kb downstream 905 true Chr3: 10254386-10255290 Arabidopsis thaliana
AT3G27680 0.5kb downstream 0.5kb downstream 500 false Chr3: 10254386-10254885 Arabidopsis thaliana
AT3G27680 1.0kb upstream 1.0kb upstream 1405 true Chr3: 10254886-10256290 Arabidopsis thaliana
AT3G27680 1.0kb upstream 1.0kb upstream 1000 false Chr3: 10255291-10256290 Arabidopsis thaliana
AT3G27680 1.0kb downstream 1.0kb downstream 1405 true Chr3: 10253886-10255290 Arabidopsis thaliana
AT3G27680 1.0kb downstream 1.0kb downstream 1000 false Chr3: 10253886-10254885 Arabidopsis thaliana
AT3G27680 2.0kb upstream 2.0kb upstream 2405 true Chr3: 10254886-10257290 Arabidopsis thaliana
AT3G27680 2.0kb upstream 2.0kb upstream 2000 false Chr3: 10255291-10257290 Arabidopsis thaliana
AT3G27680 2.0kb downstream 2.0kb downstream 2405 true Chr3: 10252886-10255290 Arabidopsis thaliana
AT3G27680 2.0kb downstream 2.0kb downstream 2000 false Chr3: 10252886-10254885 Arabidopsis thaliana
AT3G27680 5.0kb upstream 5.0kb upstream 5405 true Chr3: 10254886-10260290 Arabidopsis thaliana
AT3G27680 5.0kb upstream 5.0kb upstream 5000 false Chr3: 10255291-10260290 Arabidopsis thaliana
AT3G27680 5.0kb downstream 5.0kb downstream 5405 true Chr3: 10249886-10255290 Arabidopsis thaliana
AT3G27680 5.0kb downstream 5.0kb downstream 5000 false Chr3: 10249886-10254885 Arabidopsis thaliana
AT3G27680 10.0kb upstream 10.0kb upstream 10405 true Chr3: 10254886-10265290 Arabidopsis thaliana
AT3G27680 10.0kb upstream 10.0kb upstream 10000 false Chr3: 10255291-10265290 Arabidopsis thaliana
AT3G27680 10.0kb downstream 10.0kb downstream 10405 true Chr3: 10244886-10255290 Arabidopsis thaliana
AT3G27680 10.0kb downstream 10.0kb downstream 10000 false Chr3: 10244886-10254885 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121512059 5273 Angiosperm View MSA
122380220 5261 Brassicaceae View MSA
123802607 5264 Brassicales-Malvales View MSA
124299789 5266 SBM View MSA
124151113 5268 Malvidae View MSA
123876618 5270 Rosid View MSA
123460272 5271 Pentapetalae View MSA
122495649 5272 Eudicot View MSA
120785085 5274 Embryophyte View MSA
122826958 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain