Gene : SDH2-1 A. thaliana TAIR10
Primary Identifier:  ? AT3G27380 Defline:  (1 of 3) K00235 - succinate dehydrogenase (ubiquinone) iron-sulfur subunit (SDHB, SDH2)
Genomic Order:  2895 Name:  ? AT3G27380
Secondary Identifier:  ? PAC:19658637
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-3781 Arabidopsis thaliana pathologic  
Athaliana PWY-4302 Arabidopsis thaliana pathologic  
Athaliana PWY-5464 Arabidopsis thaliana pathologic  
Athaliana PWY-561 Arabidopsis thaliana pathologic  
Athaliana PWY-5690 Arabidopsis thaliana pathologic  
Athaliana PWY-7279 Arabidopsis thaliana pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G27380 0.5kb upstream 0.5kb upstream 3651 true Chr3: 10129610-10133260 Arabidopsis thaliana
AT3G27380 0.5kb upstream 0.5kb upstream 500 false Chr3: 10132761-10133260 Arabidopsis thaliana
AT3G27380 0.5kb downstream 0.5kb downstream 3651 true Chr3: 10129110-10132760 Arabidopsis thaliana
AT3G27380 0.5kb downstream 0.5kb downstream 500 false Chr3: 10129110-10129609 Arabidopsis thaliana
AT3G27380 1.0kb upstream 1.0kb upstream 4151 true Chr3: 10129610-10133760 Arabidopsis thaliana
AT3G27380 1.0kb upstream 1.0kb upstream 1000 false Chr3: 10132761-10133760 Arabidopsis thaliana
AT3G27380 1.0kb downstream 1.0kb downstream 4151 true Chr3: 10128610-10132760 Arabidopsis thaliana
AT3G27380 1.0kb downstream 1.0kb downstream 1000 false Chr3: 10128610-10129609 Arabidopsis thaliana
AT3G27380 2.0kb upstream 2.0kb upstream 5151 true Chr3: 10129610-10134760 Arabidopsis thaliana
AT3G27380 2.0kb upstream 2.0kb upstream 2000 false Chr3: 10132761-10134760 Arabidopsis thaliana
AT3G27380 2.0kb downstream 2.0kb downstream 5151 true Chr3: 10127610-10132760 Arabidopsis thaliana
AT3G27380 2.0kb downstream 2.0kb downstream 2000 false Chr3: 10127610-10129609 Arabidopsis thaliana
AT3G27380 5.0kb upstream 5.0kb upstream 8151 true Chr3: 10129610-10137760 Arabidopsis thaliana
AT3G27380 5.0kb upstream 5.0kb upstream 5000 false Chr3: 10132761-10137760 Arabidopsis thaliana
AT3G27380 5.0kb downstream 5.0kb downstream 8151 true Chr3: 10124610-10132760 Arabidopsis thaliana
AT3G27380 5.0kb downstream 5.0kb downstream 5000 false Chr3: 10124610-10129609 Arabidopsis thaliana
AT3G27380 10.0kb upstream 10.0kb upstream 13151 true Chr3: 10129610-10142760 Arabidopsis thaliana
AT3G27380 10.0kb upstream 10.0kb upstream 10000 false Chr3: 10132761-10142760 Arabidopsis thaliana
AT3G27380 10.0kb downstream 10.0kb downstream 13151 true Chr3: 10119610-10132760 Arabidopsis thaliana
AT3G27380 10.0kb downstream 10.0kb downstream 10000 false Chr3: 10119610-10129609 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377104 5261 Brassicaceae View MSA
123827832 5264 Brassicales-Malvales View MSA
124342277 5266 SBM View MSA
124240423 5268 Malvidae View MSA
124072619 5270 Rosid View MSA
123748072 5271 Pentapetalae View MSA
122787884 5272 Eudicot View MSA
122049105 5273 Angiosperm View MSA
121351479 5274 Embryophyte View MSA
123424532 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.823       Low
cufflinks 10.12        
cufflinks 9.028       Low
cufflinks 11.343        
cufflinks 10.163        
cufflinks 11.833       High

0 Strain