Gene : CLC-B A. thaliana TAIR10
Primary Identifier:  ? AT3G27170 Defline:  (1 of 2) PTHR11689//PTHR11689:SF67 - CHLORIDE CHANNEL // CHLORIDE CHANNEL PROTEIN CLC-A-RELATED
Genomic Order:  2871 Name:  ? AT3G27170
Secondary Identifier:  ? PAC:19661746
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G27170 0.5kb upstream 0.5kb upstream 3682 true Chr3: 10023517-10027198 Arabidopsis thaliana
AT3G27170 0.5kb upstream 0.5kb upstream 500 false Chr3: 10023517-10024016 Arabidopsis thaliana
AT3G27170 0.5kb downstream 0.5kb downstream 3682 true Chr3: 10024017-10027698 Arabidopsis thaliana
AT3G27170 0.5kb downstream 0.5kb downstream 500 false Chr3: 10027199-10027698 Arabidopsis thaliana
AT3G27170 1.0kb upstream 1.0kb upstream 4182 true Chr3: 10023017-10027198 Arabidopsis thaliana
AT3G27170 1.0kb upstream 1.0kb upstream 1000 false Chr3: 10023017-10024016 Arabidopsis thaliana
AT3G27170 1.0kb downstream 1.0kb downstream 4182 true Chr3: 10024017-10028198 Arabidopsis thaliana
AT3G27170 1.0kb downstream 1.0kb downstream 1000 false Chr3: 10027199-10028198 Arabidopsis thaliana
AT3G27170 2.0kb upstream 2.0kb upstream 5182 true Chr3: 10022017-10027198 Arabidopsis thaliana
AT3G27170 2.0kb upstream 2.0kb upstream 2000 false Chr3: 10022017-10024016 Arabidopsis thaliana
AT3G27170 2.0kb downstream 2.0kb downstream 5182 true Chr3: 10024017-10029198 Arabidopsis thaliana
AT3G27170 2.0kb downstream 2.0kb downstream 2000 false Chr3: 10027199-10029198 Arabidopsis thaliana
AT3G27170 5.0kb upstream 5.0kb upstream 8182 true Chr3: 10019017-10027198 Arabidopsis thaliana
AT3G27170 5.0kb upstream 5.0kb upstream 5000 false Chr3: 10019017-10024016 Arabidopsis thaliana
AT3G27170 5.0kb downstream 5.0kb downstream 8182 true Chr3: 10024017-10032198 Arabidopsis thaliana
AT3G27170 5.0kb downstream 5.0kb downstream 5000 false Chr3: 10027199-10032198 Arabidopsis thaliana
AT3G27170 10.0kb upstream 10.0kb upstream 13182 true Chr3: 10014017-10027198 Arabidopsis thaliana
AT3G27170 10.0kb upstream 10.0kb upstream 10000 false Chr3: 10014017-10024016 Arabidopsis thaliana
AT3G27170 10.0kb downstream 10.0kb downstream 13182 true Chr3: 10024017-10037198 Arabidopsis thaliana
AT3G27170 10.0kb downstream 10.0kb downstream 10000 false Chr3: 10027199-10037198 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374397 5261 Brassicaceae View MSA
123835500 5264 Brassicales-Malvales View MSA
124343295 5266 SBM View MSA
124242649 5268 Malvidae View MSA
124064691 5270 Rosid View MSA
123741834 5271 Pentapetalae View MSA
122788464 5272 Eudicot View MSA
122042930 5273 Angiosperm View MSA
121310046 5274 Embryophyte View MSA
123428433 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.205     Low Low
cufflinks 7.359        
cufflinks 0.309        
cufflinks 12.83       High
cufflinks 0.341        
cufflinks 6.283        

0 Strain