Gene : GHS1 A. thaliana TAIR10
Primary Identifier:  ? AT3G27160 Defline:  (1 of 2) PTHR21109:SF0 - 28S RIBOSOMAL PROTEIN S21, MITOCHONDRIAL
Genomic Order:  2870 Name:  ? AT3G27160
Secondary Identifier:  ? PAC:19659491
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G27160 0.5kb upstream 0.5kb upstream 2115 true Chr3: 10016976-10019090 Arabidopsis thaliana
AT3G27160 0.5kb upstream 0.5kb upstream 500 false Chr3: 10016976-10017475 Arabidopsis thaliana
AT3G27160 0.5kb downstream 0.5kb downstream 2115 true Chr3: 10017476-10019590 Arabidopsis thaliana
AT3G27160 0.5kb downstream 0.5kb downstream 500 false Chr3: 10019091-10019590 Arabidopsis thaliana
AT3G27160 1.0kb upstream 1.0kb upstream 2615 true Chr3: 10016476-10019090 Arabidopsis thaliana
AT3G27160 1.0kb upstream 1.0kb upstream 1000 false Chr3: 10016476-10017475 Arabidopsis thaliana
AT3G27160 1.0kb downstream 1.0kb downstream 2615 true Chr3: 10017476-10020090 Arabidopsis thaliana
AT3G27160 1.0kb downstream 1.0kb downstream 1000 false Chr3: 10019091-10020090 Arabidopsis thaliana
AT3G27160 2.0kb upstream 2.0kb upstream 3615 true Chr3: 10015476-10019090 Arabidopsis thaliana
AT3G27160 2.0kb upstream 2.0kb upstream 2000 false Chr3: 10015476-10017475 Arabidopsis thaliana
AT3G27160 2.0kb downstream 2.0kb downstream 3615 true Chr3: 10017476-10021090 Arabidopsis thaliana
AT3G27160 2.0kb downstream 2.0kb downstream 2000 false Chr3: 10019091-10021090 Arabidopsis thaliana
AT3G27160 5.0kb upstream 5.0kb upstream 6615 true Chr3: 10012476-10019090 Arabidopsis thaliana
AT3G27160 5.0kb upstream 5.0kb upstream 5000 false Chr3: 10012476-10017475 Arabidopsis thaliana
AT3G27160 5.0kb downstream 5.0kb downstream 6615 true Chr3: 10017476-10024090 Arabidopsis thaliana
AT3G27160 5.0kb downstream 5.0kb downstream 5000 false Chr3: 10019091-10024090 Arabidopsis thaliana
AT3G27160 10.0kb upstream 10.0kb upstream 11615 true Chr3: 10007476-10019090 Arabidopsis thaliana
AT3G27160 10.0kb upstream 10.0kb upstream 10000 false Chr3: 10007476-10017475 Arabidopsis thaliana
AT3G27160 10.0kb downstream 10.0kb downstream 11615 true Chr3: 10017476-10029090 Arabidopsis thaliana
AT3G27160 10.0kb downstream 10.0kb downstream 10000 false Chr3: 10019091-10029090 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027800 5273 Angiosperm View MSA
122371340 5261 Brassicaceae View MSA
123835287 5264 Brassicales-Malvales View MSA
124343449 5266 SBM View MSA
124242624 5268 Malvidae View MSA
124065865 5270 Rosid View MSA
123745699 5271 Pentapetalae View MSA
122793832 5272 Eudicot View MSA
121349916 5274 Embryophyte View MSA
123426860 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 128.461     High  
cufflinks 10.273        
cufflinks 168.849     High High
cufflinks 9.29        
cufflinks 105.426     High  
cufflinks 9.826        

0 Strain