Gene : AT3G17020 A. thaliana TAIR10
Defline:  (1 of 41) PF00582 - Universal stress protein family (Usp) Genomic Order:  1751
Name:  ? AT3G17020 Secondary Identifier:  ? PAC:19663777
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G17020 0.5kb upstream 0.5kb upstream 2122 true Chr3: 5802536-5804657 Arabidopsis thaliana
AT3G17020 0.5kb upstream 0.5kb upstream 500 false Chr3: 5804158-5804657 Arabidopsis thaliana
AT3G17020 0.5kb downstream 0.5kb downstream 2122 true Chr3: 5802036-5804157 Arabidopsis thaliana
AT3G17020 0.5kb downstream 0.5kb downstream 500 false Chr3: 5802036-5802535 Arabidopsis thaliana
AT3G17020 1.0kb upstream 1.0kb upstream 2622 true Chr3: 5802536-5805157 Arabidopsis thaliana
AT3G17020 1.0kb upstream 1.0kb upstream 1000 false Chr3: 5804158-5805157 Arabidopsis thaliana
AT3G17020 1.0kb downstream 1.0kb downstream 2622 true Chr3: 5801536-5804157 Arabidopsis thaliana
AT3G17020 1.0kb downstream 1.0kb downstream 1000 false Chr3: 5801536-5802535 Arabidopsis thaliana
AT3G17020 2.0kb upstream 2.0kb upstream 3622 true Chr3: 5802536-5806157 Arabidopsis thaliana
AT3G17020 2.0kb upstream 2.0kb upstream 2000 false Chr3: 5804158-5806157 Arabidopsis thaliana
AT3G17020 2.0kb downstream 2.0kb downstream 3622 true Chr3: 5800536-5804157 Arabidopsis thaliana
AT3G17020 2.0kb downstream 2.0kb downstream 2000 false Chr3: 5800536-5802535 Arabidopsis thaliana
AT3G17020 5.0kb upstream 5.0kb upstream 6622 true Chr3: 5802536-5809157 Arabidopsis thaliana
AT3G17020 5.0kb upstream 5.0kb upstream 5000 false Chr3: 5804158-5809157 Arabidopsis thaliana
AT3G17020 5.0kb downstream 5.0kb downstream 6622 true Chr3: 5797536-5804157 Arabidopsis thaliana
AT3G17020 5.0kb downstream 5.0kb downstream 5000 false Chr3: 5797536-5802535 Arabidopsis thaliana
AT3G17020 10.0kb upstream 10.0kb upstream 11622 true Chr3: 5802536-5814157 Arabidopsis thaliana
AT3G17020 10.0kb upstream 10.0kb upstream 10000 false Chr3: 5804158-5814157 Arabidopsis thaliana
AT3G17020 10.0kb downstream 10.0kb downstream 11622 true Chr3: 5792536-5804157 Arabidopsis thaliana
AT3G17020 10.0kb downstream 10.0kb downstream 10000 false Chr3: 5792536-5802535 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369838 5261 Brassicaceae View MSA
123835650 5264 Brassicales-Malvales View MSA
124337819 5266 SBM View MSA
124238919 5268 Malvidae View MSA
124063992 5270 Rosid View MSA
123739309 5271 Pentapetalae View MSA
122785643 5272 Eudicot View MSA
122048128 5273 Angiosperm View MSA
121348607 5274 Embryophyte View MSA
123427901 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 109.307     High Low
cufflinks 218.181     High High
cufflinks 126.837     High  
cufflinks 180.667     High  
cufflinks 142.315     High  
cufflinks 168.346     High  

0 Strain