Gene : AT3G16940 A. thaliana TAIR10
Defline:  (1 of 2) PTHR23335//PTHR23335:SF3 - CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA // CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 5-RELATED Genomic Order:  1743
Name:  ? AT3G16940 Secondary Identifier:  ? PAC:19660477
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G16940 0.5kb upstream 0.5kb upstream 5006 true Chr3: 5781275-5786280 Arabidopsis thaliana
AT3G16940 0.5kb upstream 0.5kb upstream 500 false Chr3: 5781275-5781774 Arabidopsis thaliana
AT3G16940 0.5kb downstream 0.5kb downstream 5006 true Chr3: 5781775-5786780 Arabidopsis thaliana
AT3G16940 0.5kb downstream 0.5kb downstream 500 false Chr3: 5786281-5786780 Arabidopsis thaliana
AT3G16940 1.0kb upstream 1.0kb upstream 5506 true Chr3: 5780775-5786280 Arabidopsis thaliana
AT3G16940 1.0kb upstream 1.0kb upstream 1000 false Chr3: 5780775-5781774 Arabidopsis thaliana
AT3G16940 1.0kb downstream 1.0kb downstream 5506 true Chr3: 5781775-5787280 Arabidopsis thaliana
AT3G16940 1.0kb downstream 1.0kb downstream 1000 false Chr3: 5786281-5787280 Arabidopsis thaliana
AT3G16940 2.0kb upstream 2.0kb upstream 6506 true Chr3: 5779775-5786280 Arabidopsis thaliana
AT3G16940 2.0kb upstream 2.0kb upstream 2000 false Chr3: 5779775-5781774 Arabidopsis thaliana
AT3G16940 2.0kb downstream 2.0kb downstream 6506 true Chr3: 5781775-5788280 Arabidopsis thaliana
AT3G16940 2.0kb downstream 2.0kb downstream 2000 false Chr3: 5786281-5788280 Arabidopsis thaliana
AT3G16940 5.0kb upstream 5.0kb upstream 9506 true Chr3: 5776775-5786280 Arabidopsis thaliana
AT3G16940 5.0kb upstream 5.0kb upstream 5000 false Chr3: 5776775-5781774 Arabidopsis thaliana
AT3G16940 5.0kb downstream 5.0kb downstream 9506 true Chr3: 5781775-5791280 Arabidopsis thaliana
AT3G16940 5.0kb downstream 5.0kb downstream 5000 false Chr3: 5786281-5791280 Arabidopsis thaliana
AT3G16940 10.0kb upstream 10.0kb upstream 14506 true Chr3: 5771775-5786280 Arabidopsis thaliana
AT3G16940 10.0kb upstream 10.0kb upstream 10000 false Chr3: 5771775-5781774 Arabidopsis thaliana
AT3G16940 10.0kb downstream 10.0kb downstream 14506 true Chr3: 5781775-5796280 Arabidopsis thaliana
AT3G16940 10.0kb downstream 10.0kb downstream 10000 false Chr3: 5786281-5796280 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360780 5261 Brassicaceae View MSA
123798024 5264 Brassicales-Malvales View MSA
124295712 5266 SBM View MSA
124250326 5268 Malvidae View MSA
124060879 5270 Rosid View MSA
123739187 5271 Pentapetalae View MSA
122787070 5272 Eudicot View MSA
122044952 5273 Angiosperm View MSA
121310369 5274 Embryophyte View MSA
123347871 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.288       High
cufflinks 12.27        
cufflinks 11.908        
cufflinks 12.455        
cufflinks 12.453        
cufflinks 9.795       Low

0 Strain