Gene : AT3G16760 A. thaliana TAIR10
Defline:  (1 of 1) PTHR22904//PTHR22904:SF169 - TPR REPEAT CONTAINING PROTEIN // RNA POLYMERASE II-ASSOCIATED PROTEIN 3 Genomic Order:  1722
Name:  ? AT3G16760 Secondary Identifier:  ? PAC:19664544
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G16760 0.5kb upstream 0.5kb upstream 2801 true Chr3: 5702513-5705313 Arabidopsis thaliana
AT3G16760 0.5kb upstream 0.5kb upstream 500 false Chr3: 5702513-5703012 Arabidopsis thaliana
AT3G16760 0.5kb downstream 0.5kb downstream 2801 true Chr3: 5703013-5705813 Arabidopsis thaliana
AT3G16760 0.5kb downstream 0.5kb downstream 500 false Chr3: 5705314-5705813 Arabidopsis thaliana
AT3G16760 1.0kb upstream 1.0kb upstream 3301 true Chr3: 5702013-5705313 Arabidopsis thaliana
AT3G16760 1.0kb upstream 1.0kb upstream 1000 false Chr3: 5702013-5703012 Arabidopsis thaliana
AT3G16760 1.0kb downstream 1.0kb downstream 3301 true Chr3: 5703013-5706313 Arabidopsis thaliana
AT3G16760 1.0kb downstream 1.0kb downstream 1000 false Chr3: 5705314-5706313 Arabidopsis thaliana
AT3G16760 2.0kb upstream 2.0kb upstream 4301 true Chr3: 5701013-5705313 Arabidopsis thaliana
AT3G16760 2.0kb upstream 2.0kb upstream 2000 false Chr3: 5701013-5703012 Arabidopsis thaliana
AT3G16760 2.0kb downstream 2.0kb downstream 4301 true Chr3: 5703013-5707313 Arabidopsis thaliana
AT3G16760 2.0kb downstream 2.0kb downstream 2000 false Chr3: 5705314-5707313 Arabidopsis thaliana
AT3G16760 5.0kb upstream 5.0kb upstream 7301 true Chr3: 5698013-5705313 Arabidopsis thaliana
AT3G16760 5.0kb upstream 5.0kb upstream 5000 false Chr3: 5698013-5703012 Arabidopsis thaliana
AT3G16760 5.0kb downstream 5.0kb downstream 7301 true Chr3: 5703013-5710313 Arabidopsis thaliana
AT3G16760 5.0kb downstream 5.0kb downstream 5000 false Chr3: 5705314-5710313 Arabidopsis thaliana
AT3G16760 10.0kb upstream 10.0kb upstream 12301 true Chr3: 5693013-5705313 Arabidopsis thaliana
AT3G16760 10.0kb upstream 10.0kb upstream 10000 false Chr3: 5693013-5703012 Arabidopsis thaliana
AT3G16760 10.0kb downstream 10.0kb downstream 12301 true Chr3: 5703013-5715313 Arabidopsis thaliana
AT3G16760 10.0kb downstream 10.0kb downstream 10000 false Chr3: 5705314-5715313 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026696 5273 Angiosperm View MSA
122378517 5261 Brassicaceae View MSA
123836853 5264 Brassicales-Malvales View MSA
124346842 5266 SBM View MSA
124246437 5268 Malvidae View MSA
124069433 5270 Rosid View MSA
123746924 5271 Pentapetalae View MSA
122794448 5272 Eudicot View MSA
123429169 5275 Viridiplantae View MSA
121348213 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.689        
cufflinks 9.898        
cufflinks 6.757       Low
cufflinks 10.395        
cufflinks 7.165        
cufflinks 12.935       High

0 Strain