Gene : AT3G16330 A. thaliana TAIR10
Defline:  (1 of 4) PTHR33265:SF8 - F5F19.20 PROTEIN Genomic Order:  1675
Name:  ? AT3G16330 Secondary Identifier:  ? PAC:19663199
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G16330 0.5kb upstream 0.5kb upstream 1368 true Chr3: 5534696-5536063 Arabidopsis thaliana
AT3G16330 0.5kb upstream 0.5kb upstream 500 false Chr3: 5534696-5535195 Arabidopsis thaliana
AT3G16330 0.5kb downstream 0.5kb downstream 1368 true Chr3: 5535196-5536563 Arabidopsis thaliana
AT3G16330 0.5kb downstream 0.5kb downstream 500 false Chr3: 5536064-5536563 Arabidopsis thaliana
AT3G16330 1.0kb upstream 1.0kb upstream 1868 true Chr3: 5534196-5536063 Arabidopsis thaliana
AT3G16330 1.0kb upstream 1.0kb upstream 1000 false Chr3: 5534196-5535195 Arabidopsis thaliana
AT3G16330 1.0kb downstream 1.0kb downstream 1868 true Chr3: 5535196-5537063 Arabidopsis thaliana
AT3G16330 1.0kb downstream 1.0kb downstream 1000 false Chr3: 5536064-5537063 Arabidopsis thaliana
AT3G16330 2.0kb upstream 2.0kb upstream 2868 true Chr3: 5533196-5536063 Arabidopsis thaliana
AT3G16330 2.0kb upstream 2.0kb upstream 2000 false Chr3: 5533196-5535195 Arabidopsis thaliana
AT3G16330 2.0kb downstream 2.0kb downstream 2868 true Chr3: 5535196-5538063 Arabidopsis thaliana
AT3G16330 2.0kb downstream 2.0kb downstream 2000 false Chr3: 5536064-5538063 Arabidopsis thaliana
AT3G16330 5.0kb upstream 5.0kb upstream 5868 true Chr3: 5530196-5536063 Arabidopsis thaliana
AT3G16330 5.0kb upstream 5.0kb upstream 5000 false Chr3: 5530196-5535195 Arabidopsis thaliana
AT3G16330 5.0kb downstream 5.0kb downstream 5868 true Chr3: 5535196-5541063 Arabidopsis thaliana
AT3G16330 5.0kb downstream 5.0kb downstream 5000 false Chr3: 5536064-5541063 Arabidopsis thaliana
AT3G16330 10.0kb upstream 10.0kb upstream 10868 true Chr3: 5525196-5536063 Arabidopsis thaliana
AT3G16330 10.0kb upstream 10.0kb upstream 10000 false Chr3: 5525196-5535195 Arabidopsis thaliana
AT3G16330 10.0kb downstream 10.0kb downstream 10868 true Chr3: 5535196-5546063 Arabidopsis thaliana
AT3G16330 10.0kb downstream 10.0kb downstream 10000 false Chr3: 5536064-5546063 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379597 5261 Brassicaceae View MSA
123840936 5264 Brassicales-Malvales View MSA
124348654 5266 SBM View MSA
124246073 5268 Malvidae View MSA
124070746 5270 Rosid View MSA
123749628 5271 Pentapetalae View MSA
122795982 5272 Eudicot View MSA
122049050 5273 Angiosperm View MSA
121311224 5274 Embryophyte View MSA
123348548 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.21        
cufflinks 6.717        
cufflinks 1.616        
cufflinks 9.363       High
cufflinks 1.13       Low
cufflinks 7.856        

0 Strain