Gene : PPI2 A. thaliana TAIR10
Primary Identifier:  ? AT3G15340 Defline:  (1 of 5) PTHR32219:SF2 - PROTON PUMP-INTERACTOR 1-RELATED
Genomic Order:  1559 Name:  ? AT3G15340
Secondary Identifier:  ? PAC:19663591
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G15340 0.5kb upstream 0.5kb upstream 3644 true Chr3: 5159698-5163341 Arabidopsis thaliana
AT3G15340 0.5kb upstream 0.5kb upstream 500 false Chr3: 5162842-5163341 Arabidopsis thaliana
AT3G15340 0.5kb downstream 0.5kb downstream 3644 true Chr3: 5159198-5162841 Arabidopsis thaliana
AT3G15340 0.5kb downstream 0.5kb downstream 500 false Chr3: 5159198-5159697 Arabidopsis thaliana
AT3G15340 1.0kb upstream 1.0kb upstream 4144 true Chr3: 5159698-5163841 Arabidopsis thaliana
AT3G15340 1.0kb upstream 1.0kb upstream 1000 false Chr3: 5162842-5163841 Arabidopsis thaliana
AT3G15340 1.0kb downstream 1.0kb downstream 4144 true Chr3: 5158698-5162841 Arabidopsis thaliana
AT3G15340 1.0kb downstream 1.0kb downstream 1000 false Chr3: 5158698-5159697 Arabidopsis thaliana
AT3G15340 2.0kb upstream 2.0kb upstream 5144 true Chr3: 5159698-5164841 Arabidopsis thaliana
AT3G15340 2.0kb upstream 2.0kb upstream 2000 false Chr3: 5162842-5164841 Arabidopsis thaliana
AT3G15340 2.0kb downstream 2.0kb downstream 5144 true Chr3: 5157698-5162841 Arabidopsis thaliana
AT3G15340 2.0kb downstream 2.0kb downstream 2000 false Chr3: 5157698-5159697 Arabidopsis thaliana
AT3G15340 5.0kb upstream 5.0kb upstream 8144 true Chr3: 5159698-5167841 Arabidopsis thaliana
AT3G15340 5.0kb upstream 5.0kb upstream 5000 false Chr3: 5162842-5167841 Arabidopsis thaliana
AT3G15340 5.0kb downstream 5.0kb downstream 8144 true Chr3: 5154698-5162841 Arabidopsis thaliana
AT3G15340 5.0kb downstream 5.0kb downstream 5000 false Chr3: 5154698-5159697 Arabidopsis thaliana
AT3G15340 10.0kb upstream 10.0kb upstream 13144 true Chr3: 5159698-5172841 Arabidopsis thaliana
AT3G15340 10.0kb upstream 10.0kb upstream 10000 false Chr3: 5162842-5172841 Arabidopsis thaliana
AT3G15340 10.0kb downstream 10.0kb downstream 13144 true Chr3: 5149698-5162841 Arabidopsis thaliana
AT3G15340 10.0kb downstream 10.0kb downstream 10000 false Chr3: 5149698-5159697 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121510316 5273 Angiosperm View MSA
122361888 5261 Brassicaceae View MSA
123798267 5264 Brassicales-Malvales View MSA
124295931 5266 SBM View MSA
124148234 5268 Malvidae View MSA
123874273 5270 Rosid View MSA
123458274 5271 Pentapetalae View MSA
122493680 5272 Eudicot View MSA
121350876 5274 Embryophyte View MSA
123428188 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.192     Low  
cufflinks 0.762        
cufflinks 0.096     Low Low
cufflinks 1.601       High
cufflinks 0.121     Low  
cufflinks 0.597        

0 Strain