Gene : AT3G14172 A. thaliana TAIR10
Defline:  (1 of 3) PTHR31008:SF3 - COP1-INTERACTING PROTEIN-RELATED PROTEIN-RELATED Genomic Order:  1436
Name:  ? AT3G14172 Secondary Identifier:  ? PAC:19660517
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G14172 0.5kb upstream 0.5kb upstream 7567 true Chr3: 4698563-4706129 Arabidopsis thaliana
AT3G14172 0.5kb upstream 0.5kb upstream 500 false Chr3: 4705630-4706129 Arabidopsis thaliana
AT3G14172 0.5kb downstream 0.5kb downstream 7567 true Chr3: 4698063-4705629 Arabidopsis thaliana
AT3G14172 0.5kb downstream 0.5kb downstream 500 false Chr3: 4698063-4698562 Arabidopsis thaliana
AT3G14172 1.0kb upstream 1.0kb upstream 8067 true Chr3: 4698563-4706629 Arabidopsis thaliana
AT3G14172 1.0kb upstream 1.0kb upstream 1000 false Chr3: 4705630-4706629 Arabidopsis thaliana
AT3G14172 1.0kb downstream 1.0kb downstream 8067 true Chr3: 4697563-4705629 Arabidopsis thaliana
AT3G14172 1.0kb downstream 1.0kb downstream 1000 false Chr3: 4697563-4698562 Arabidopsis thaliana
AT3G14172 2.0kb upstream 2.0kb upstream 9067 true Chr3: 4698563-4707629 Arabidopsis thaliana
AT3G14172 2.0kb upstream 2.0kb upstream 2000 false Chr3: 4705630-4707629 Arabidopsis thaliana
AT3G14172 2.0kb downstream 2.0kb downstream 9067 true Chr3: 4696563-4705629 Arabidopsis thaliana
AT3G14172 2.0kb downstream 2.0kb downstream 2000 false Chr3: 4696563-4698562 Arabidopsis thaliana
AT3G14172 5.0kb upstream 5.0kb upstream 12067 true Chr3: 4698563-4710629 Arabidopsis thaliana
AT3G14172 5.0kb upstream 5.0kb upstream 5000 false Chr3: 4705630-4710629 Arabidopsis thaliana
AT3G14172 5.0kb downstream 5.0kb downstream 12067 true Chr3: 4693563-4705629 Arabidopsis thaliana
AT3G14172 5.0kb downstream 5.0kb downstream 5000 false Chr3: 4693563-4698562 Arabidopsis thaliana
AT3G14172 10.0kb upstream 10.0kb upstream 17067 true Chr3: 4698563-4715629 Arabidopsis thaliana
AT3G14172 10.0kb upstream 10.0kb upstream 10000 false Chr3: 4705630-4715629 Arabidopsis thaliana
AT3G14172 10.0kb downstream 10.0kb downstream 17067 true Chr3: 4688563-4705629 Arabidopsis thaliana
AT3G14172 10.0kb downstream 10.0kb downstream 10000 false Chr3: 4688563-4698562 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378893 5261 Brassicaceae View MSA
123841431 5264 Brassicales-Malvales View MSA
124339053 5266 SBM View MSA
124251623 5268 Malvidae View MSA
124070250 5270 Rosid View MSA
123751203 5271 Pentapetalae View MSA
122797098 5272 Eudicot View MSA
122048758 5273 Angiosperm View MSA
121350762 5274 Embryophyte View MSA
123381879 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.215       Low
cufflinks 8.646        
cufflinks 4.078        
cufflinks 8.347        
cufflinks 3.011       Low
cufflinks 8.807        

0 Strain