Gene : AT3G13930 A. thaliana TAIR10
Defline:  (1 of 2) PTHR23151//PTHR23151:SF59 - DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1409
Name:  ? AT3G13930 Secondary Identifier:  ? PAC:19662074
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5173 Arabidopsis thaliana pathologic  
Athaliana PWY-5464 Arabidopsis thaliana pathologic  
Athaliana PYRUVDEHYD-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G13930 0.5kb upstream 0.5kb upstream 5094 true Chr3: 4595376-4600469 Arabidopsis thaliana
AT3G13930 0.5kb upstream 0.5kb upstream 500 false Chr3: 4595376-4595875 Arabidopsis thaliana
AT3G13930 0.5kb downstream 0.5kb downstream 5094 true Chr3: 4595876-4600969 Arabidopsis thaliana
AT3G13930 0.5kb downstream 0.5kb downstream 500 false Chr3: 4600470-4600969 Arabidopsis thaliana
AT3G13930 1.0kb upstream 1.0kb upstream 5594 true Chr3: 4594876-4600469 Arabidopsis thaliana
AT3G13930 1.0kb upstream 1.0kb upstream 1000 false Chr3: 4594876-4595875 Arabidopsis thaliana
AT3G13930 1.0kb downstream 1.0kb downstream 5594 true Chr3: 4595876-4601469 Arabidopsis thaliana
AT3G13930 1.0kb downstream 1.0kb downstream 1000 false Chr3: 4600470-4601469 Arabidopsis thaliana
AT3G13930 2.0kb upstream 2.0kb upstream 6594 true Chr3: 4593876-4600469 Arabidopsis thaliana
AT3G13930 2.0kb upstream 2.0kb upstream 2000 false Chr3: 4593876-4595875 Arabidopsis thaliana
AT3G13930 2.0kb downstream 2.0kb downstream 6594 true Chr3: 4595876-4602469 Arabidopsis thaliana
AT3G13930 2.0kb downstream 2.0kb downstream 2000 false Chr3: 4600470-4602469 Arabidopsis thaliana
AT3G13930 5.0kb upstream 5.0kb upstream 9594 true Chr3: 4590876-4600469 Arabidopsis thaliana
AT3G13930 5.0kb upstream 5.0kb upstream 5000 false Chr3: 4590876-4595875 Arabidopsis thaliana
AT3G13930 5.0kb downstream 5.0kb downstream 9594 true Chr3: 4595876-4605469 Arabidopsis thaliana
AT3G13930 5.0kb downstream 5.0kb downstream 5000 false Chr3: 4600470-4605469 Arabidopsis thaliana
AT3G13930 10.0kb upstream 10.0kb upstream 14594 true Chr3: 4585876-4600469 Arabidopsis thaliana
AT3G13930 10.0kb upstream 10.0kb upstream 10000 false Chr3: 4585876-4595875 Arabidopsis thaliana
AT3G13930 10.0kb downstream 10.0kb downstream 14594 true Chr3: 4595876-4610469 Arabidopsis thaliana
AT3G13930 10.0kb downstream 10.0kb downstream 10000 false Chr3: 4600470-4610469 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366332 5261 Brassicaceae View MSA
123835606 5264 Brassicales-Malvales View MSA
124344538 5266 SBM View MSA
124243608 5268 Malvidae View MSA
124061053 5270 Rosid View MSA
123739083 5271 Pentapetalae View MSA
122788575 5272 Eudicot View MSA
122043289 5273 Angiosperm View MSA
121343868 5274 Embryophyte View MSA
123426306 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.849        
cufflinks 17.589        
cufflinks 16.562        
cufflinks 20.375        
cufflinks 14.781       Low
cufflinks 24.798       High

0 Strain