Gene : LDL2 A. thaliana TAIR10
Primary Identifier:  ? AT3G13682 Defline:  (1 of 1) PTHR10742//PTHR10742:SF210 - AMINE OXIDASE // LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 2
Genomic Order:  1376 Name:  ? AT3G13682
Secondary Identifier:  ? PAC:19661324
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6441 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G13682 0.5kb upstream 0.5kb upstream 2817 true Chr3: 4479193-4482009 Arabidopsis thaliana
AT3G13682 0.5kb upstream 0.5kb upstream 500 false Chr3: 4481510-4482009 Arabidopsis thaliana
AT3G13682 0.5kb downstream 0.5kb downstream 2817 true Chr3: 4478693-4481509 Arabidopsis thaliana
AT3G13682 0.5kb downstream 0.5kb downstream 500 false Chr3: 4478693-4479192 Arabidopsis thaliana
AT3G13682 1.0kb upstream 1.0kb upstream 3317 true Chr3: 4479193-4482509 Arabidopsis thaliana
AT3G13682 1.0kb upstream 1.0kb upstream 1000 false Chr3: 4481510-4482509 Arabidopsis thaliana
AT3G13682 1.0kb downstream 1.0kb downstream 3317 true Chr3: 4478193-4481509 Arabidopsis thaliana
AT3G13682 1.0kb downstream 1.0kb downstream 1000 false Chr3: 4478193-4479192 Arabidopsis thaliana
AT3G13682 2.0kb upstream 2.0kb upstream 4317 true Chr3: 4479193-4483509 Arabidopsis thaliana
AT3G13682 2.0kb upstream 2.0kb upstream 2000 false Chr3: 4481510-4483509 Arabidopsis thaliana
AT3G13682 2.0kb downstream 2.0kb downstream 4317 true Chr3: 4477193-4481509 Arabidopsis thaliana
AT3G13682 2.0kb downstream 2.0kb downstream 2000 false Chr3: 4477193-4479192 Arabidopsis thaliana
AT3G13682 5.0kb upstream 5.0kb upstream 7317 true Chr3: 4479193-4486509 Arabidopsis thaliana
AT3G13682 5.0kb upstream 5.0kb upstream 5000 false Chr3: 4481510-4486509 Arabidopsis thaliana
AT3G13682 5.0kb downstream 5.0kb downstream 7317 true Chr3: 4474193-4481509 Arabidopsis thaliana
AT3G13682 5.0kb downstream 5.0kb downstream 5000 false Chr3: 4474193-4479192 Arabidopsis thaliana
AT3G13682 10.0kb upstream 10.0kb upstream 12317 true Chr3: 4479193-4491509 Arabidopsis thaliana
AT3G13682 10.0kb upstream 10.0kb upstream 10000 false Chr3: 4481510-4491509 Arabidopsis thaliana
AT3G13682 10.0kb downstream 10.0kb downstream 12317 true Chr3: 4469193-4481509 Arabidopsis thaliana
AT3G13682 10.0kb downstream 10.0kb downstream 10000 false Chr3: 4469193-4479192 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374256 5261 Brassicaceae View MSA
123829075 5264 Brassicales-Malvales View MSA
124336597 5266 SBM View MSA
124242009 5268 Malvidae View MSA
124065563 5270 Rosid View MSA
123738735 5271 Pentapetalae View MSA
122791879 5272 Eudicot View MSA
122041755 5273 Angiosperm View MSA
121350960 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.475        
cufflinks 1.5        
cufflinks 0.857        
cufflinks 1.738        
cufflinks 0.697       Low
cufflinks 1.965       High

0 Strain