Gene : AT3G13660 A. thaliana TAIR10
Defline:  (1 of 5) PTHR21495//PTHR21495:SF59 - NUCLEOPORIN-RELATED // DIRIGENT PROTEIN 20-RELATED Genomic Order:  1369
Name:  ? AT3G13660 Secondary Identifier:  ? PAC:19663235
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G13660 0.5kb upstream 0.5kb upstream 1179 true Chr3: 4464408-4465586 Arabidopsis thaliana
AT3G13660 0.5kb upstream 0.5kb upstream 500 false Chr3: 4464408-4464907 Arabidopsis thaliana
AT3G13660 0.5kb downstream 0.5kb downstream 1179 true Chr3: 4464908-4466086 Arabidopsis thaliana
AT3G13660 0.5kb downstream 0.5kb downstream 500 false Chr3: 4465587-4466086 Arabidopsis thaliana
AT3G13660 1.0kb upstream 1.0kb upstream 1679 true Chr3: 4463908-4465586 Arabidopsis thaliana
AT3G13660 1.0kb upstream 1.0kb upstream 1000 false Chr3: 4463908-4464907 Arabidopsis thaliana
AT3G13660 1.0kb downstream 1.0kb downstream 1679 true Chr3: 4464908-4466586 Arabidopsis thaliana
AT3G13660 1.0kb downstream 1.0kb downstream 1000 false Chr3: 4465587-4466586 Arabidopsis thaliana
AT3G13660 2.0kb upstream 2.0kb upstream 2679 true Chr3: 4462908-4465586 Arabidopsis thaliana
AT3G13660 2.0kb upstream 2.0kb upstream 2000 false Chr3: 4462908-4464907 Arabidopsis thaliana
AT3G13660 2.0kb downstream 2.0kb downstream 2679 true Chr3: 4464908-4467586 Arabidopsis thaliana
AT3G13660 2.0kb downstream 2.0kb downstream 2000 false Chr3: 4465587-4467586 Arabidopsis thaliana
AT3G13660 5.0kb upstream 5.0kb upstream 5679 true Chr3: 4459908-4465586 Arabidopsis thaliana
AT3G13660 5.0kb upstream 5.0kb upstream 5000 false Chr3: 4459908-4464907 Arabidopsis thaliana
AT3G13660 5.0kb downstream 5.0kb downstream 5679 true Chr3: 4464908-4470586 Arabidopsis thaliana
AT3G13660 5.0kb downstream 5.0kb downstream 5000 false Chr3: 4465587-4470586 Arabidopsis thaliana
AT3G13660 10.0kb upstream 10.0kb upstream 10679 true Chr3: 4454908-4465586 Arabidopsis thaliana
AT3G13660 10.0kb upstream 10.0kb upstream 10000 false Chr3: 4454908-4464907 Arabidopsis thaliana
AT3G13660 10.0kb downstream 10.0kb downstream 10679 true Chr3: 4464908-4475586 Arabidopsis thaliana
AT3G13660 10.0kb downstream 10.0kb downstream 10000 false Chr3: 4465587-4475586 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122330146 5261 Brassicaceae Singleton cluster - no MSA
123771413 5264 Brassicales-Malvales Singleton cluster - no MSA
124269942 5266 SBM Singleton cluster - no MSA
124254373 5268 Malvidae View MSA
124074832 5270 Rosid View MSA
123751910 5271 Pentapetalae View MSA
122797233 5272 Eudicot View MSA
122051134 5273 Angiosperm View MSA
121351582 5274 Embryophyte View MSA
123382236 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.245     Low  
cufflinks 0.087     Low  
cufflinks 0.102     Low  
cufflinks 0.017     Low Low
cufflinks 0.356       High

0 Strain