Gene : DIN4 A. thaliana TAIR10
Primary Identifier:  ? AT3G13450 Defline:  (1 of 2) K00167 - 2-oxoisovalerate dehydrogenase E1 component beta subunit (BCKDHB, bkdA2)
Genomic Order:  1347 Name:  ? AT3G13450
Secondary Identifier:  ? PAC:19663781
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5046 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G13450 0.5kb upstream 0.5kb upstream 2739 true Chr3: 4382198-4384936 Arabidopsis thaliana
AT3G13450 0.5kb upstream 0.5kb upstream 500 false Chr3: 4384437-4384936 Arabidopsis thaliana
AT3G13450 0.5kb downstream 0.5kb downstream 2739 true Chr3: 4381698-4384436 Arabidopsis thaliana
AT3G13450 0.5kb downstream 0.5kb downstream 500 false Chr3: 4381698-4382197 Arabidopsis thaliana
AT3G13450 1.0kb upstream 1.0kb upstream 3239 true Chr3: 4382198-4385436 Arabidopsis thaliana
AT3G13450 1.0kb upstream 1.0kb upstream 1000 false Chr3: 4384437-4385436 Arabidopsis thaliana
AT3G13450 1.0kb downstream 1.0kb downstream 3239 true Chr3: 4381198-4384436 Arabidopsis thaliana
AT3G13450 1.0kb downstream 1.0kb downstream 1000 false Chr3: 4381198-4382197 Arabidopsis thaliana
AT3G13450 2.0kb upstream 2.0kb upstream 4239 true Chr3: 4382198-4386436 Arabidopsis thaliana
AT3G13450 2.0kb upstream 2.0kb upstream 2000 false Chr3: 4384437-4386436 Arabidopsis thaliana
AT3G13450 2.0kb downstream 2.0kb downstream 4239 true Chr3: 4380198-4384436 Arabidopsis thaliana
AT3G13450 2.0kb downstream 2.0kb downstream 2000 false Chr3: 4380198-4382197 Arabidopsis thaliana
AT3G13450 5.0kb upstream 5.0kb upstream 7239 true Chr3: 4382198-4389436 Arabidopsis thaliana
AT3G13450 5.0kb upstream 5.0kb upstream 5000 false Chr3: 4384437-4389436 Arabidopsis thaliana
AT3G13450 5.0kb downstream 5.0kb downstream 7239 true Chr3: 4377198-4384436 Arabidopsis thaliana
AT3G13450 5.0kb downstream 5.0kb downstream 5000 false Chr3: 4377198-4382197 Arabidopsis thaliana
AT3G13450 10.0kb upstream 10.0kb upstream 12239 true Chr3: 4382198-4394436 Arabidopsis thaliana
AT3G13450 10.0kb upstream 10.0kb upstream 10000 false Chr3: 4384437-4394436 Arabidopsis thaliana
AT3G13450 10.0kb downstream 10.0kb downstream 12239 true Chr3: 4372198-4384436 Arabidopsis thaliana
AT3G13450 10.0kb downstream 10.0kb downstream 10000 false Chr3: 4372198-4382197 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377784 5261 Brassicaceae View MSA
123830123 5264 Brassicales-Malvales View MSA
124341245 5266 SBM View MSA
124243640 5268 Malvidae View MSA
124067270 5270 Rosid View MSA
123743874 5271 Pentapetalae View MSA
122787684 5272 Eudicot View MSA
122046166 5273 Angiosperm View MSA
121344271 5274 Embryophyte View MSA
123424966 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.139        
cufflinks 6.212        
cufflinks 22.376       High
cufflinks 6.607        
cufflinks 24.349       High
cufflinks 4.247       Low

0 Strain