Gene : AT3G13580 A. thaliana TAIR10
Defline:  (1 of 4) K02937 - large subunit ribosomal protein L7e (RP-L7e, RPL7) Genomic Order:  1360
Name:  ? AT3G13580 Secondary Identifier:  ? PAC:19661127
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G13580 0.5kb upstream 0.5kb upstream 2759 true Chr3: 4432547-4435305 Arabidopsis thaliana
AT3G13580 0.5kb upstream 0.5kb upstream 500 false Chr3: 4432547-4433046 Arabidopsis thaliana
AT3G13580 0.5kb downstream 0.5kb downstream 2759 true Chr3: 4433047-4435805 Arabidopsis thaliana
AT3G13580 0.5kb downstream 0.5kb downstream 500 false Chr3: 4435306-4435805 Arabidopsis thaliana
AT3G13580 1.0kb upstream 1.0kb upstream 3259 true Chr3: 4432047-4435305 Arabidopsis thaliana
AT3G13580 1.0kb upstream 1.0kb upstream 1000 false Chr3: 4432047-4433046 Arabidopsis thaliana
AT3G13580 1.0kb downstream 1.0kb downstream 3259 true Chr3: 4433047-4436305 Arabidopsis thaliana
AT3G13580 1.0kb downstream 1.0kb downstream 1000 false Chr3: 4435306-4436305 Arabidopsis thaliana
AT3G13580 2.0kb upstream 2.0kb upstream 4259 true Chr3: 4431047-4435305 Arabidopsis thaliana
AT3G13580 2.0kb upstream 2.0kb upstream 2000 false Chr3: 4431047-4433046 Arabidopsis thaliana
AT3G13580 2.0kb downstream 2.0kb downstream 4259 true Chr3: 4433047-4437305 Arabidopsis thaliana
AT3G13580 2.0kb downstream 2.0kb downstream 2000 false Chr3: 4435306-4437305 Arabidopsis thaliana
AT3G13580 5.0kb upstream 5.0kb upstream 7259 true Chr3: 4428047-4435305 Arabidopsis thaliana
AT3G13580 5.0kb upstream 5.0kb upstream 5000 false Chr3: 4428047-4433046 Arabidopsis thaliana
AT3G13580 5.0kb downstream 5.0kb downstream 7259 true Chr3: 4433047-4440305 Arabidopsis thaliana
AT3G13580 5.0kb downstream 5.0kb downstream 5000 false Chr3: 4435306-4440305 Arabidopsis thaliana
AT3G13580 10.0kb upstream 10.0kb upstream 12259 true Chr3: 4423047-4435305 Arabidopsis thaliana
AT3G13580 10.0kb upstream 10.0kb upstream 10000 false Chr3: 4423047-4433046 Arabidopsis thaliana
AT3G13580 10.0kb downstream 10.0kb downstream 12259 true Chr3: 4433047-4445305 Arabidopsis thaliana
AT3G13580 10.0kb downstream 10.0kb downstream 10000 false Chr3: 4435306-4445305 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377489 5261 Brassicaceae View MSA
123837820 5264 Brassicales-Malvales View MSA
124345694 5266 SBM View MSA
124247875 5268 Malvidae View MSA
124062917 5270 Rosid View MSA
123741837 5271 Pentapetalae View MSA
122788380 5272 Eudicot View MSA
122049877 5273 Angiosperm View MSA
121343831 5274 Embryophyte View MSA
123423799 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.248        
cufflinks 23.056        
cufflinks 12.626        
cufflinks 24.554       High
cufflinks 11.358       Low
cufflinks 22.509        

0 Strain