Gene : AT3G21540 A. thaliana TAIR10
Defline:  (1 of 1) K14556 - U3 small nucleolar RNA-associated protein 12 (DIP2, UTP12, WDR3) Genomic Order:  2246
Name:  ? AT3G21540 Secondary Identifier:  ? PAC:19665142
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G21540 0.5kb upstream 0.5kb upstream 5411 true Chr3: 7585946-7591356 Arabidopsis thaliana
AT3G21540 0.5kb upstream 0.5kb upstream 500 false Chr3: 7590857-7591356 Arabidopsis thaliana
AT3G21540 0.5kb downstream 0.5kb downstream 5411 true Chr3: 7585446-7590856 Arabidopsis thaliana
AT3G21540 0.5kb downstream 0.5kb downstream 500 false Chr3: 7585446-7585945 Arabidopsis thaliana
AT3G21540 1.0kb upstream 1.0kb upstream 5911 true Chr3: 7585946-7591856 Arabidopsis thaliana
AT3G21540 1.0kb upstream 1.0kb upstream 1000 false Chr3: 7590857-7591856 Arabidopsis thaliana
AT3G21540 1.0kb downstream 1.0kb downstream 5911 true Chr3: 7584946-7590856 Arabidopsis thaliana
AT3G21540 1.0kb downstream 1.0kb downstream 1000 false Chr3: 7584946-7585945 Arabidopsis thaliana
AT3G21540 2.0kb upstream 2.0kb upstream 6911 true Chr3: 7585946-7592856 Arabidopsis thaliana
AT3G21540 2.0kb upstream 2.0kb upstream 2000 false Chr3: 7590857-7592856 Arabidopsis thaliana
AT3G21540 2.0kb downstream 2.0kb downstream 6911 true Chr3: 7583946-7590856 Arabidopsis thaliana
AT3G21540 2.0kb downstream 2.0kb downstream 2000 false Chr3: 7583946-7585945 Arabidopsis thaliana
AT3G21540 5.0kb upstream 5.0kb upstream 9911 true Chr3: 7585946-7595856 Arabidopsis thaliana
AT3G21540 5.0kb upstream 5.0kb upstream 5000 false Chr3: 7590857-7595856 Arabidopsis thaliana
AT3G21540 5.0kb downstream 5.0kb downstream 9911 true Chr3: 7580946-7590856 Arabidopsis thaliana
AT3G21540 5.0kb downstream 5.0kb downstream 5000 false Chr3: 7580946-7585945 Arabidopsis thaliana
AT3G21540 10.0kb upstream 10.0kb upstream 14911 true Chr3: 7585946-7600856 Arabidopsis thaliana
AT3G21540 10.0kb upstream 10.0kb upstream 10000 false Chr3: 7590857-7600856 Arabidopsis thaliana
AT3G21540 10.0kb downstream 10.0kb downstream 14911 true Chr3: 7575946-7590856 Arabidopsis thaliana
AT3G21540 10.0kb downstream 10.0kb downstream 10000 false Chr3: 7575946-7585945 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373717 5261 Brassicaceae View MSA
123832869 5264 Brassicales-Malvales View MSA
124345063 5266 SBM View MSA
124241542 5268 Malvidae View MSA
124061475 5270 Rosid View MSA
123739283 5271 Pentapetalae View MSA
122787451 5272 Eudicot View MSA
122046155 5273 Angiosperm View MSA
121346306 5274 Embryophyte View MSA
123424601 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.316        
cufflinks 6.74        
cufflinks 3.918        
cufflinks 7.472        
cufflinks 3.204       Low
cufflinks 8.282       High

0 Strain