Gene : ALY3 A. thaliana TAIR10
Primary Identifier:  ? AT3G21430 Defline:  (1 of 1) PTHR21689//PTHR21689:SF2 - LIN-9 // PROTEIN LIN-9 HOMOLOG
Genomic Order:  2235 Name:  ? AT3G21430
Secondary Identifier:  ? PAC:19663722
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G21430 0.5kb upstream 0.5kb upstream 9452 true Chr3: 7544628-7554079 Arabidopsis thaliana
AT3G21430 0.5kb upstream 0.5kb upstream 500 false Chr3: 7553580-7554079 Arabidopsis thaliana
AT3G21430 0.5kb downstream 0.5kb downstream 9452 true Chr3: 7544128-7553579 Arabidopsis thaliana
AT3G21430 0.5kb downstream 0.5kb downstream 500 false Chr3: 7544128-7544627 Arabidopsis thaliana
AT3G21430 1.0kb upstream 1.0kb upstream 9952 true Chr3: 7544628-7554579 Arabidopsis thaliana
AT3G21430 1.0kb upstream 1.0kb upstream 1000 false Chr3: 7553580-7554579 Arabidopsis thaliana
AT3G21430 1.0kb downstream 1.0kb downstream 9952 true Chr3: 7543628-7553579 Arabidopsis thaliana
AT3G21430 1.0kb downstream 1.0kb downstream 1000 false Chr3: 7543628-7544627 Arabidopsis thaliana
AT3G21430 2.0kb upstream 2.0kb upstream 10952 true Chr3: 7544628-7555579 Arabidopsis thaliana
AT3G21430 2.0kb upstream 2.0kb upstream 2000 false Chr3: 7553580-7555579 Arabidopsis thaliana
AT3G21430 2.0kb downstream 2.0kb downstream 10952 true Chr3: 7542628-7553579 Arabidopsis thaliana
AT3G21430 2.0kb downstream 2.0kb downstream 2000 false Chr3: 7542628-7544627 Arabidopsis thaliana
AT3G21430 5.0kb upstream 5.0kb upstream 13952 true Chr3: 7544628-7558579 Arabidopsis thaliana
AT3G21430 5.0kb upstream 5.0kb upstream 5000 false Chr3: 7553580-7558579 Arabidopsis thaliana
AT3G21430 5.0kb downstream 5.0kb downstream 13952 true Chr3: 7539628-7553579 Arabidopsis thaliana
AT3G21430 5.0kb downstream 5.0kb downstream 5000 false Chr3: 7539628-7544627 Arabidopsis thaliana
AT3G21430 10.0kb upstream 10.0kb upstream 18952 true Chr3: 7544628-7563579 Arabidopsis thaliana
AT3G21430 10.0kb upstream 10.0kb upstream 10000 false Chr3: 7553580-7563579 Arabidopsis thaliana
AT3G21430 10.0kb downstream 10.0kb downstream 18952 true Chr3: 7534628-7553579 Arabidopsis thaliana
AT3G21430 10.0kb downstream 10.0kb downstream 10000 false Chr3: 7534628-7544627 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040981 5273 Angiosperm View MSA
122360394 5261 Brassicaceae View MSA
123838016 5264 Brassicales-Malvales View MSA
124350607 5266 SBM View MSA
124253154 5268 Malvidae View MSA
124072139 5270 Rosid View MSA
123744019 5271 Pentapetalae View MSA
122796198 5272 Eudicot View MSA
121349318 5274 Embryophyte View MSA
123424502 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.558       Low
cufflinks 4.956       High
cufflinks 3.822        
cufflinks 5.083       High
cufflinks 3.993        
cufflinks 4.293        

0 Strain