Gene : PSBTN A. thaliana TAIR10
Primary Identifier:  ? AT3G21055 Defline:  (1 of 2) PTHR34940:SF1 - PHOTOSYSTEM II 5 KDA PROTEIN, CHLOROPLASTIC
Genomic Order:  2190 Name:  ? AT3G21055
Secondary Identifier:  ? PAC:19658828
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G21055 0.5kb upstream 0.5kb upstream 1052 true Chr3: 7376635-7377686 Arabidopsis thaliana
AT3G21055 0.5kb upstream 0.5kb upstream 500 false Chr3: 7377187-7377686 Arabidopsis thaliana
AT3G21055 0.5kb downstream 0.5kb downstream 1052 true Chr3: 7376135-7377186 Arabidopsis thaliana
AT3G21055 0.5kb downstream 0.5kb downstream 500 false Chr3: 7376135-7376634 Arabidopsis thaliana
AT3G21055 1.0kb upstream 1.0kb upstream 1552 true Chr3: 7376635-7378186 Arabidopsis thaliana
AT3G21055 1.0kb upstream 1.0kb upstream 1000 false Chr3: 7377187-7378186 Arabidopsis thaliana
AT3G21055 1.0kb downstream 1.0kb downstream 1552 true Chr3: 7375635-7377186 Arabidopsis thaliana
AT3G21055 1.0kb downstream 1.0kb downstream 1000 false Chr3: 7375635-7376634 Arabidopsis thaliana
AT3G21055 2.0kb upstream 2.0kb upstream 2552 true Chr3: 7376635-7379186 Arabidopsis thaliana
AT3G21055 2.0kb upstream 2.0kb upstream 2000 false Chr3: 7377187-7379186 Arabidopsis thaliana
AT3G21055 2.0kb downstream 2.0kb downstream 2552 true Chr3: 7374635-7377186 Arabidopsis thaliana
AT3G21055 2.0kb downstream 2.0kb downstream 2000 false Chr3: 7374635-7376634 Arabidopsis thaliana
AT3G21055 5.0kb upstream 5.0kb upstream 5552 true Chr3: 7376635-7382186 Arabidopsis thaliana
AT3G21055 5.0kb upstream 5.0kb upstream 5000 false Chr3: 7377187-7382186 Arabidopsis thaliana
AT3G21055 5.0kb downstream 5.0kb downstream 5552 true Chr3: 7371635-7377186 Arabidopsis thaliana
AT3G21055 5.0kb downstream 5.0kb downstream 5000 false Chr3: 7371635-7376634 Arabidopsis thaliana
AT3G21055 10.0kb upstream 10.0kb upstream 10552 true Chr3: 7376635-7387186 Arabidopsis thaliana
AT3G21055 10.0kb upstream 10.0kb upstream 10000 false Chr3: 7377187-7387186 Arabidopsis thaliana
AT3G21055 10.0kb downstream 10.0kb downstream 10552 true Chr3: 7366635-7377186 Arabidopsis thaliana
AT3G21055 10.0kb downstream 10.0kb downstream 10000 false Chr3: 7366635-7376634 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381402 5261 Brassicaceae View MSA
123840325 5264 Brassicales-Malvales View MSA
124349006 5266 SBM View MSA
124249733 5268 Malvidae View MSA
124063108 5270 Rosid View MSA
123738637 5271 Pentapetalae View MSA
122793683 5272 Eudicot View MSA
122046745 5273 Angiosperm View MSA
121349271 5274 Embryophyte View MSA
123427633 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 986.612     High  
cufflinks 4.875        
cufflinks 1234.817     High  
cufflinks 5.747        
cufflinks 1098.888     High  
cufflinks 2.903       Low

0 Strain