Gene : TOP6B A. thaliana TAIR10
Primary Identifier:  ? AT3G20780 Defline:  (1 of 1) PTHR10871:SF4 - DNA TOPOISOMERASE 6 SUBUNIT B
Genomic Order:  2162 Name:  ? AT3G20780
Secondary Identifier:  ? PAC:19663854
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0 Pathways

Genomics

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Expression

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5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G20780 0.5kb upstream 0.5kb upstream 5173 true Chr3: 7263900-7269072 Arabidopsis thaliana
AT3G20780 0.5kb upstream 0.5kb upstream 500 false Chr3: 7268573-7269072 Arabidopsis thaliana
AT3G20780 0.5kb downstream 0.5kb downstream 5173 true Chr3: 7263400-7268572 Arabidopsis thaliana
AT3G20780 0.5kb downstream 0.5kb downstream 500 false Chr3: 7263400-7263899 Arabidopsis thaliana
AT3G20780 1.0kb upstream 1.0kb upstream 5673 true Chr3: 7263900-7269572 Arabidopsis thaliana
AT3G20780 1.0kb upstream 1.0kb upstream 1000 false Chr3: 7268573-7269572 Arabidopsis thaliana
AT3G20780 1.0kb downstream 1.0kb downstream 5673 true Chr3: 7262900-7268572 Arabidopsis thaliana
AT3G20780 1.0kb downstream 1.0kb downstream 1000 false Chr3: 7262900-7263899 Arabidopsis thaliana
AT3G20780 2.0kb upstream 2.0kb upstream 6673 true Chr3: 7263900-7270572 Arabidopsis thaliana
AT3G20780 2.0kb upstream 2.0kb upstream 2000 false Chr3: 7268573-7270572 Arabidopsis thaliana
AT3G20780 2.0kb downstream 2.0kb downstream 6673 true Chr3: 7261900-7268572 Arabidopsis thaliana
AT3G20780 2.0kb downstream 2.0kb downstream 2000 false Chr3: 7261900-7263899 Arabidopsis thaliana
AT3G20780 5.0kb upstream 5.0kb upstream 9673 true Chr3: 7263900-7273572 Arabidopsis thaliana
AT3G20780 5.0kb upstream 5.0kb upstream 5000 false Chr3: 7268573-7273572 Arabidopsis thaliana
AT3G20780 5.0kb downstream 5.0kb downstream 9673 true Chr3: 7258900-7268572 Arabidopsis thaliana
AT3G20780 5.0kb downstream 5.0kb downstream 5000 false Chr3: 7258900-7263899 Arabidopsis thaliana
AT3G20780 10.0kb upstream 10.0kb upstream 14673 true Chr3: 7263900-7278572 Arabidopsis thaliana
AT3G20780 10.0kb upstream 10.0kb upstream 10000 false Chr3: 7268573-7278572 Arabidopsis thaliana
AT3G20780 10.0kb downstream 10.0kb downstream 14673 true Chr3: 7253900-7268572 Arabidopsis thaliana
AT3G20780 10.0kb downstream 10.0kb downstream 10000 false Chr3: 7253900-7263899 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365194 5261 Brassicaceae View MSA
123834334 5264 Brassicales-Malvales View MSA
124342184 5266 SBM View MSA
124242885 5268 Malvidae View MSA
124062604 5270 Rosid View MSA
123736411 5271 Pentapetalae View MSA
122792021 5272 Eudicot View MSA
122045441 5273 Angiosperm View MSA
121347083 5274 Embryophyte View MSA
123424987 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.898        
cufflinks 3.096        
cufflinks 2.132        
cufflinks 3.485        
cufflinks 1.813       Low
cufflinks 3.582        

0 Strain