Gene : AT3G20180 A. thaliana TAIR10
Defline:  (1 of 1) PTHR22814//PTHR22814:SF34 - COPPER TRANSPORT PROTEIN ATOX1-RELATED // COPPER TRANSPORT PROTEIN-RELATED Genomic Order:  2097
Name:  ? AT3G20180 Secondary Identifier:  ? PAC:19662263
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G20180 0.5kb upstream 0.5kb upstream 957 true Chr3: 7043385-7044341 Arabidopsis thaliana
AT3G20180 0.5kb upstream 0.5kb upstream 500 false Chr3: 7043842-7044341 Arabidopsis thaliana
AT3G20180 0.5kb downstream 0.5kb downstream 957 true Chr3: 7042885-7043841 Arabidopsis thaliana
AT3G20180 0.5kb downstream 0.5kb downstream 500 false Chr3: 7042885-7043384 Arabidopsis thaliana
AT3G20180 1.0kb upstream 1.0kb upstream 1457 true Chr3: 7043385-7044841 Arabidopsis thaliana
AT3G20180 1.0kb upstream 1.0kb upstream 1000 false Chr3: 7043842-7044841 Arabidopsis thaliana
AT3G20180 1.0kb downstream 1.0kb downstream 1457 true Chr3: 7042385-7043841 Arabidopsis thaliana
AT3G20180 1.0kb downstream 1.0kb downstream 1000 false Chr3: 7042385-7043384 Arabidopsis thaliana
AT3G20180 2.0kb upstream 2.0kb upstream 2457 true Chr3: 7043385-7045841 Arabidopsis thaliana
AT3G20180 2.0kb upstream 2.0kb upstream 2000 false Chr3: 7043842-7045841 Arabidopsis thaliana
AT3G20180 2.0kb downstream 2.0kb downstream 2457 true Chr3: 7041385-7043841 Arabidopsis thaliana
AT3G20180 2.0kb downstream 2.0kb downstream 2000 false Chr3: 7041385-7043384 Arabidopsis thaliana
AT3G20180 5.0kb upstream 5.0kb upstream 5457 true Chr3: 7043385-7048841 Arabidopsis thaliana
AT3G20180 5.0kb upstream 5.0kb upstream 5000 false Chr3: 7043842-7048841 Arabidopsis thaliana
AT3G20180 5.0kb downstream 5.0kb downstream 5457 true Chr3: 7038385-7043841 Arabidopsis thaliana
AT3G20180 5.0kb downstream 5.0kb downstream 5000 false Chr3: 7038385-7043384 Arabidopsis thaliana
AT3G20180 10.0kb upstream 10.0kb upstream 10457 true Chr3: 7043385-7053841 Arabidopsis thaliana
AT3G20180 10.0kb upstream 10.0kb upstream 10000 false Chr3: 7043842-7053841 Arabidopsis thaliana
AT3G20180 10.0kb downstream 10.0kb downstream 10457 true Chr3: 7033385-7043841 Arabidopsis thaliana
AT3G20180 10.0kb downstream 10.0kb downstream 10000 false Chr3: 7033385-7043384 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364102 5261 Brassicaceae View MSA
123832889 5264 Brassicales-Malvales View MSA
124350127 5266 SBM View MSA
124254447 5268 Malvidae View MSA
124072357 5270 Rosid View MSA
123753587 5271 Pentapetalae View MSA
122796697 5272 Eudicot View MSA
122051560 5273 Angiosperm View MSA
121351529 5274 Embryophyte View MSA
123424750 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.656       High
cufflinks 0.199     Low  
cufflinks 0.109     Low Low
cufflinks 0.137     Low  
cufflinks 0.258        
cufflinks 0.315     Low  

0 Strain