Gene : TCP-1 A. thaliana TAIR10
Primary Identifier:  ? AT3G20050 Defline:  (1 of 1) K09493 - T-complex protein 1 subunit alpha (CCT1, TCP1)
Genomic Order:  2083 Name:  ? AT3G20050
Secondary Identifier:  ? PAC:19660678
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G20050 0.5kb upstream 0.5kb upstream 4667 true Chr3: 6998238-7002904 Arabidopsis thaliana
AT3G20050 0.5kb upstream 0.5kb upstream 500 false Chr3: 7002405-7002904 Arabidopsis thaliana
AT3G20050 0.5kb downstream 0.5kb downstream 4667 true Chr3: 6997738-7002404 Arabidopsis thaliana
AT3G20050 0.5kb downstream 0.5kb downstream 500 false Chr3: 6997738-6998237 Arabidopsis thaliana
AT3G20050 1.0kb upstream 1.0kb upstream 5167 true Chr3: 6998238-7003404 Arabidopsis thaliana
AT3G20050 1.0kb upstream 1.0kb upstream 1000 false Chr3: 7002405-7003404 Arabidopsis thaliana
AT3G20050 1.0kb downstream 1.0kb downstream 5167 true Chr3: 6997238-7002404 Arabidopsis thaliana
AT3G20050 1.0kb downstream 1.0kb downstream 1000 false Chr3: 6997238-6998237 Arabidopsis thaliana
AT3G20050 2.0kb upstream 2.0kb upstream 6167 true Chr3: 6998238-7004404 Arabidopsis thaliana
AT3G20050 2.0kb upstream 2.0kb upstream 2000 false Chr3: 7002405-7004404 Arabidopsis thaliana
AT3G20050 2.0kb downstream 2.0kb downstream 6167 true Chr3: 6996238-7002404 Arabidopsis thaliana
AT3G20050 2.0kb downstream 2.0kb downstream 2000 false Chr3: 6996238-6998237 Arabidopsis thaliana
AT3G20050 5.0kb upstream 5.0kb upstream 9167 true Chr3: 6998238-7007404 Arabidopsis thaliana
AT3G20050 5.0kb upstream 5.0kb upstream 5000 false Chr3: 7002405-7007404 Arabidopsis thaliana
AT3G20050 5.0kb downstream 5.0kb downstream 9167 true Chr3: 6993238-7002404 Arabidopsis thaliana
AT3G20050 5.0kb downstream 5.0kb downstream 5000 false Chr3: 6993238-6998237 Arabidopsis thaliana
AT3G20050 10.0kb upstream 10.0kb upstream 14167 true Chr3: 6998238-7012404 Arabidopsis thaliana
AT3G20050 10.0kb upstream 10.0kb upstream 10000 false Chr3: 7002405-7012404 Arabidopsis thaliana
AT3G20050 10.0kb downstream 10.0kb downstream 14167 true Chr3: 6988238-7002404 Arabidopsis thaliana
AT3G20050 10.0kb downstream 10.0kb downstream 10000 false Chr3: 6988238-6998237 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370672 5261 Brassicaceae View MSA
123828629 5264 Brassicales-Malvales View MSA
124342877 5266 SBM View MSA
124241319 5268 Malvidae View MSA
124067300 5270 Rosid View MSA
123737840 5271 Pentapetalae View MSA
122792769 5272 Eudicot View MSA
122046551 5273 Angiosperm View MSA
121345633 5274 Embryophyte View MSA
123423902 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.847     High  
cufflinks 51.374     High  
cufflinks 29.467     High  
cufflinks 55.113     High  
cufflinks 26.671     High Low
cufflinks 63.122     High High

0 Strain