Gene : AT3G19540 A. thaliana TAIR10
Defline:  (1 of 9) PF04788 - Protein of unknown function (DUF620) (DUF620) Genomic Order:  2028
Name:  ? AT3G19540 Secondary Identifier:  ? PAC:19661692
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G19540 0.5kb upstream 0.5kb upstream 3048 true Chr3: 6780119-6783166 Arabidopsis thaliana
AT3G19540 0.5kb upstream 0.5kb upstream 500 false Chr3: 6780119-6780618 Arabidopsis thaliana
AT3G19540 0.5kb downstream 0.5kb downstream 3048 true Chr3: 6780619-6783666 Arabidopsis thaliana
AT3G19540 0.5kb downstream 0.5kb downstream 500 false Chr3: 6783167-6783666 Arabidopsis thaliana
AT3G19540 1.0kb upstream 1.0kb upstream 3548 true Chr3: 6779619-6783166 Arabidopsis thaliana
AT3G19540 1.0kb upstream 1.0kb upstream 1000 false Chr3: 6779619-6780618 Arabidopsis thaliana
AT3G19540 1.0kb downstream 1.0kb downstream 3548 true Chr3: 6780619-6784166 Arabidopsis thaliana
AT3G19540 1.0kb downstream 1.0kb downstream 1000 false Chr3: 6783167-6784166 Arabidopsis thaliana
AT3G19540 2.0kb upstream 2.0kb upstream 4548 true Chr3: 6778619-6783166 Arabidopsis thaliana
AT3G19540 2.0kb upstream 2.0kb upstream 2000 false Chr3: 6778619-6780618 Arabidopsis thaliana
AT3G19540 2.0kb downstream 2.0kb downstream 4548 true Chr3: 6780619-6785166 Arabidopsis thaliana
AT3G19540 2.0kb downstream 2.0kb downstream 2000 false Chr3: 6783167-6785166 Arabidopsis thaliana
AT3G19540 5.0kb upstream 5.0kb upstream 7548 true Chr3: 6775619-6783166 Arabidopsis thaliana
AT3G19540 5.0kb upstream 5.0kb upstream 5000 false Chr3: 6775619-6780618 Arabidopsis thaliana
AT3G19540 5.0kb downstream 5.0kb downstream 7548 true Chr3: 6780619-6788166 Arabidopsis thaliana
AT3G19540 5.0kb downstream 5.0kb downstream 5000 false Chr3: 6783167-6788166 Arabidopsis thaliana
AT3G19540 10.0kb upstream 10.0kb upstream 12548 true Chr3: 6770619-6783166 Arabidopsis thaliana
AT3G19540 10.0kb upstream 10.0kb upstream 10000 false Chr3: 6770619-6780618 Arabidopsis thaliana
AT3G19540 10.0kb downstream 10.0kb downstream 12548 true Chr3: 6780619-6793166 Arabidopsis thaliana
AT3G19540 10.0kb downstream 10.0kb downstream 10000 false Chr3: 6783167-6793166 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375283 5261 Brassicaceae View MSA
123840082 5264 Brassicales-Malvales View MSA
124336976 5266 SBM View MSA
124253113 5268 Malvidae View MSA
124061371 5270 Rosid View MSA
123742255 5271 Pentapetalae View MSA
122789434 5272 Eudicot View MSA
122043427 5273 Angiosperm View MSA
121310121 5274 Embryophyte View MSA
123347696 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.53        
cufflinks 29.628     High High
cufflinks 12.008        
cufflinks 25.783        
cufflinks 11.397       Low
cufflinks 24.542        

0 Strain