Gene : AT3G18790 A. thaliana TAIR10
Defline:  (1 of 1) KOG3068 - mRNA splicing factor Genomic Order:  1948
Name:  ? AT3G18790 Secondary Identifier:  ? PAC:19659583
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G18790 0.5kb upstream 0.5kb upstream 2350 true Chr3: 6477199-6479548 Arabidopsis thaliana
AT3G18790 0.5kb upstream 0.5kb upstream 500 false Chr3: 6477199-6477698 Arabidopsis thaliana
AT3G18790 0.5kb downstream 0.5kb downstream 2350 true Chr3: 6477699-6480048 Arabidopsis thaliana
AT3G18790 0.5kb downstream 0.5kb downstream 500 false Chr3: 6479549-6480048 Arabidopsis thaliana
AT3G18790 1.0kb upstream 1.0kb upstream 2850 true Chr3: 6476699-6479548 Arabidopsis thaliana
AT3G18790 1.0kb upstream 1.0kb upstream 1000 false Chr3: 6476699-6477698 Arabidopsis thaliana
AT3G18790 1.0kb downstream 1.0kb downstream 2850 true Chr3: 6477699-6480548 Arabidopsis thaliana
AT3G18790 1.0kb downstream 1.0kb downstream 1000 false Chr3: 6479549-6480548 Arabidopsis thaliana
AT3G18790 2.0kb upstream 2.0kb upstream 3850 true Chr3: 6475699-6479548 Arabidopsis thaliana
AT3G18790 2.0kb upstream 2.0kb upstream 2000 false Chr3: 6475699-6477698 Arabidopsis thaliana
AT3G18790 2.0kb downstream 2.0kb downstream 3850 true Chr3: 6477699-6481548 Arabidopsis thaliana
AT3G18790 2.0kb downstream 2.0kb downstream 2000 false Chr3: 6479549-6481548 Arabidopsis thaliana
AT3G18790 5.0kb upstream 5.0kb upstream 6850 true Chr3: 6472699-6479548 Arabidopsis thaliana
AT3G18790 5.0kb upstream 5.0kb upstream 5000 false Chr3: 6472699-6477698 Arabidopsis thaliana
AT3G18790 5.0kb downstream 5.0kb downstream 6850 true Chr3: 6477699-6484548 Arabidopsis thaliana
AT3G18790 5.0kb downstream 5.0kb downstream 5000 false Chr3: 6479549-6484548 Arabidopsis thaliana
AT3G18790 10.0kb upstream 10.0kb upstream 11850 true Chr3: 6467699-6479548 Arabidopsis thaliana
AT3G18790 10.0kb upstream 10.0kb upstream 10000 false Chr3: 6467699-6477698 Arabidopsis thaliana
AT3G18790 10.0kb downstream 10.0kb downstream 11850 true Chr3: 6477699-6489548 Arabidopsis thaliana
AT3G18790 10.0kb downstream 10.0kb downstream 10000 false Chr3: 6479549-6489548 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363425 5261 Brassicaceae View MSA
123830844 5264 Brassicales-Malvales View MSA
124344468 5266 SBM View MSA
124240907 5268 Malvidae View MSA
124067488 5270 Rosid View MSA
123737510 5271 Pentapetalae View MSA
122786189 5272 Eudicot View MSA
122043978 5273 Angiosperm View MSA
121345749 5274 Embryophyte View MSA
123424977 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.425        
cufflinks 23.075        
cufflinks 16.422        
cufflinks 21.892        
cufflinks 14.869       Low
cufflinks 25.626       High

0 Strain