Gene : MSH2 A. thaliana TAIR10
Primary Identifier:  ? AT3G18524 Defline:  (1 of 1) K08735 - DNA mismatch repair protein MSH2 (MSH2)
Genomic Order:  1918 Name:  ? AT3G18524
Secondary Identifier:  ? PAC:19663503
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G18524 0.5kb upstream 0.5kb upstream 5059 true Chr3: 6368010-6373068 Arabidopsis thaliana
AT3G18524 0.5kb upstream 0.5kb upstream 500 false Chr3: 6372569-6373068 Arabidopsis thaliana
AT3G18524 0.5kb downstream 0.5kb downstream 5059 true Chr3: 6367510-6372568 Arabidopsis thaliana
AT3G18524 0.5kb downstream 0.5kb downstream 500 false Chr3: 6367510-6368009 Arabidopsis thaliana
AT3G18524 1.0kb upstream 1.0kb upstream 5559 true Chr3: 6368010-6373568 Arabidopsis thaliana
AT3G18524 1.0kb upstream 1.0kb upstream 1000 false Chr3: 6372569-6373568 Arabidopsis thaliana
AT3G18524 1.0kb downstream 1.0kb downstream 5559 true Chr3: 6367010-6372568 Arabidopsis thaliana
AT3G18524 1.0kb downstream 1.0kb downstream 1000 false Chr3: 6367010-6368009 Arabidopsis thaliana
AT3G18524 2.0kb upstream 2.0kb upstream 6559 true Chr3: 6368010-6374568 Arabidopsis thaliana
AT3G18524 2.0kb upstream 2.0kb upstream 2000 false Chr3: 6372569-6374568 Arabidopsis thaliana
AT3G18524 2.0kb downstream 2.0kb downstream 6559 true Chr3: 6366010-6372568 Arabidopsis thaliana
AT3G18524 2.0kb downstream 2.0kb downstream 2000 false Chr3: 6366010-6368009 Arabidopsis thaliana
AT3G18524 5.0kb upstream 5.0kb upstream 9559 true Chr3: 6368010-6377568 Arabidopsis thaliana
AT3G18524 5.0kb upstream 5.0kb upstream 5000 false Chr3: 6372569-6377568 Arabidopsis thaliana
AT3G18524 5.0kb downstream 5.0kb downstream 9559 true Chr3: 6363010-6372568 Arabidopsis thaliana
AT3G18524 5.0kb downstream 5.0kb downstream 5000 false Chr3: 6363010-6368009 Arabidopsis thaliana
AT3G18524 10.0kb upstream 10.0kb upstream 14559 true Chr3: 6368010-6382568 Arabidopsis thaliana
AT3G18524 10.0kb upstream 10.0kb upstream 10000 false Chr3: 6372569-6382568 Arabidopsis thaliana
AT3G18524 10.0kb downstream 10.0kb downstream 14559 true Chr3: 6358010-6372568 Arabidopsis thaliana
AT3G18524 10.0kb downstream 10.0kb downstream 10000 false Chr3: 6358010-6368009 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361389 5261 Brassicaceae View MSA
123830207 5264 Brassicales-Malvales View MSA
124338737 5266 SBM View MSA
124239037 5268 Malvidae View MSA
124060647 5270 Rosid View MSA
123740546 5271 Pentapetalae View MSA
122786206 5272 Eudicot View MSA
122042672 5273 Angiosperm View MSA
121343804 5274 Embryophyte View MSA
123423885 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.822        
cufflinks 3.659        
cufflinks 1.982        
cufflinks 3.639        
cufflinks 1.567       Low
cufflinks 4.442       High

0 Strain