Gene : AT3G18500 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12121:SF41 - CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 3 Genomic Order:  1914
Name:  ? AT3G18500 Secondary Identifier:  ? PAC:19664916
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G18500 0.5kb upstream 0.5kb upstream 3466 true Chr3: 6351977-6355442 Arabidopsis thaliana
AT3G18500 0.5kb upstream 0.5kb upstream 500 false Chr3: 6351977-6352476 Arabidopsis thaliana
AT3G18500 0.5kb downstream 0.5kb downstream 3466 true Chr3: 6352477-6355942 Arabidopsis thaliana
AT3G18500 0.5kb downstream 0.5kb downstream 500 false Chr3: 6355443-6355942 Arabidopsis thaliana
AT3G18500 1.0kb upstream 1.0kb upstream 3966 true Chr3: 6351477-6355442 Arabidopsis thaliana
AT3G18500 1.0kb upstream 1.0kb upstream 1000 false Chr3: 6351477-6352476 Arabidopsis thaliana
AT3G18500 1.0kb downstream 1.0kb downstream 3966 true Chr3: 6352477-6356442 Arabidopsis thaliana
AT3G18500 1.0kb downstream 1.0kb downstream 1000 false Chr3: 6355443-6356442 Arabidopsis thaliana
AT3G18500 2.0kb upstream 2.0kb upstream 4966 true Chr3: 6350477-6355442 Arabidopsis thaliana
AT3G18500 2.0kb upstream 2.0kb upstream 2000 false Chr3: 6350477-6352476 Arabidopsis thaliana
AT3G18500 2.0kb downstream 2.0kb downstream 4966 true Chr3: 6352477-6357442 Arabidopsis thaliana
AT3G18500 2.0kb downstream 2.0kb downstream 2000 false Chr3: 6355443-6357442 Arabidopsis thaliana
AT3G18500 5.0kb upstream 5.0kb upstream 7966 true Chr3: 6347477-6355442 Arabidopsis thaliana
AT3G18500 5.0kb upstream 5.0kb upstream 5000 false Chr3: 6347477-6352476 Arabidopsis thaliana
AT3G18500 5.0kb downstream 5.0kb downstream 7966 true Chr3: 6352477-6360442 Arabidopsis thaliana
AT3G18500 5.0kb downstream 5.0kb downstream 5000 false Chr3: 6355443-6360442 Arabidopsis thaliana
AT3G18500 10.0kb upstream 10.0kb upstream 12966 true Chr3: 6342477-6355442 Arabidopsis thaliana
AT3G18500 10.0kb upstream 10.0kb upstream 10000 false Chr3: 6342477-6352476 Arabidopsis thaliana
AT3G18500 10.0kb downstream 10.0kb downstream 12966 true Chr3: 6352477-6365442 Arabidopsis thaliana
AT3G18500 10.0kb downstream 10.0kb downstream 10000 false Chr3: 6355443-6365442 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365529 5261 Brassicaceae View MSA
123831264 5264 Brassicales-Malvales View MSA
124336807 5266 SBM View MSA
124244277 5268 Malvidae View MSA
124063317 5270 Rosid View MSA
123750146 5271 Pentapetalae View MSA
122793805 5272 Eudicot View MSA
122047277 5273 Angiosperm View MSA
121350616 5274 Embryophyte View MSA
123428031 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.149        
cufflinks 0.333     Low  
cufflinks 3.648        
cufflinks 0.365     Low  
cufflinks 3.844        
cufflinks 0.185     Low Low

0 Strain