Gene : AT3G18230 A. thaliana TAIR10
Defline:  (1 of 3) PTHR31066//PTHR31066:SF12 - FAMILY NOT NAMED // EXPRESSED PROTEIN Genomic Order:  1882
Name:  ? AT3G18230 Secondary Identifier:  ? PAC:19659846
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G18230 0.5kb upstream 0.5kb upstream 3239 true Chr3: 6250983-6254221 Arabidopsis thaliana
AT3G18230 0.5kb upstream 0.5kb upstream 500 false Chr3: 6250983-6251482 Arabidopsis thaliana
AT3G18230 0.5kb downstream 0.5kb downstream 3239 true Chr3: 6251483-6254721 Arabidopsis thaliana
AT3G18230 0.5kb downstream 0.5kb downstream 500 false Chr3: 6254222-6254721 Arabidopsis thaliana
AT3G18230 1.0kb upstream 1.0kb upstream 3739 true Chr3: 6250483-6254221 Arabidopsis thaliana
AT3G18230 1.0kb upstream 1.0kb upstream 1000 false Chr3: 6250483-6251482 Arabidopsis thaliana
AT3G18230 1.0kb downstream 1.0kb downstream 3739 true Chr3: 6251483-6255221 Arabidopsis thaliana
AT3G18230 1.0kb downstream 1.0kb downstream 1000 false Chr3: 6254222-6255221 Arabidopsis thaliana
AT3G18230 2.0kb upstream 2.0kb upstream 4739 true Chr3: 6249483-6254221 Arabidopsis thaliana
AT3G18230 2.0kb upstream 2.0kb upstream 2000 false Chr3: 6249483-6251482 Arabidopsis thaliana
AT3G18230 2.0kb downstream 2.0kb downstream 4739 true Chr3: 6251483-6256221 Arabidopsis thaliana
AT3G18230 2.0kb downstream 2.0kb downstream 2000 false Chr3: 6254222-6256221 Arabidopsis thaliana
AT3G18230 5.0kb upstream 5.0kb upstream 7739 true Chr3: 6246483-6254221 Arabidopsis thaliana
AT3G18230 5.0kb upstream 5.0kb upstream 5000 false Chr3: 6246483-6251482 Arabidopsis thaliana
AT3G18230 5.0kb downstream 5.0kb downstream 7739 true Chr3: 6251483-6259221 Arabidopsis thaliana
AT3G18230 5.0kb downstream 5.0kb downstream 5000 false Chr3: 6254222-6259221 Arabidopsis thaliana
AT3G18230 10.0kb upstream 10.0kb upstream 12739 true Chr3: 6241483-6254221 Arabidopsis thaliana
AT3G18230 10.0kb upstream 10.0kb upstream 10000 false Chr3: 6241483-6251482 Arabidopsis thaliana
AT3G18230 10.0kb downstream 10.0kb downstream 12739 true Chr3: 6251483-6264221 Arabidopsis thaliana
AT3G18230 10.0kb downstream 10.0kb downstream 10000 false Chr3: 6254222-6264221 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370481 5261 Brassicaceae View MSA
123836114 5264 Brassicales-Malvales View MSA
124341989 5266 SBM View MSA
124240323 5268 Malvidae View MSA
124070228 5270 Rosid View MSA
123746774 5271 Pentapetalae View MSA
122786631 5272 Eudicot View MSA
122047494 5273 Angiosperm View MSA
121310747 5274 Embryophyte View MSA
123348158 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.325        
cufflinks 25.992       High
cufflinks 7.698        
cufflinks 21.257        
cufflinks 8.429        
cufflinks 25.687       High

0 Strain