Gene : AT3G18020 A. thaliana TAIR10
Defline:  (1 of 32) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  1858
Name:  ? AT3G18020 Secondary Identifier:  ? PAC:19665005
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G18020 0.5kb upstream 0.5kb upstream 2567 true Chr3: 6164949-6167515 Arabidopsis thaliana
AT3G18020 0.5kb upstream 0.5kb upstream 500 false Chr3: 6164949-6165448 Arabidopsis thaliana
AT3G18020 0.5kb downstream 0.5kb downstream 2567 true Chr3: 6165449-6168015 Arabidopsis thaliana
AT3G18020 0.5kb downstream 0.5kb downstream 500 false Chr3: 6167516-6168015 Arabidopsis thaliana
AT3G18020 1.0kb upstream 1.0kb upstream 3067 true Chr3: 6164449-6167515 Arabidopsis thaliana
AT3G18020 1.0kb upstream 1.0kb upstream 1000 false Chr3: 6164449-6165448 Arabidopsis thaliana
AT3G18020 1.0kb downstream 1.0kb downstream 3067 true Chr3: 6165449-6168515 Arabidopsis thaliana
AT3G18020 1.0kb downstream 1.0kb downstream 1000 false Chr3: 6167516-6168515 Arabidopsis thaliana
AT3G18020 2.0kb upstream 2.0kb upstream 4067 true Chr3: 6163449-6167515 Arabidopsis thaliana
AT3G18020 2.0kb upstream 2.0kb upstream 2000 false Chr3: 6163449-6165448 Arabidopsis thaliana
AT3G18020 2.0kb downstream 2.0kb downstream 4067 true Chr3: 6165449-6169515 Arabidopsis thaliana
AT3G18020 2.0kb downstream 2.0kb downstream 2000 false Chr3: 6167516-6169515 Arabidopsis thaliana
AT3G18020 5.0kb upstream 5.0kb upstream 7067 true Chr3: 6160449-6167515 Arabidopsis thaliana
AT3G18020 5.0kb upstream 5.0kb upstream 5000 false Chr3: 6160449-6165448 Arabidopsis thaliana
AT3G18020 5.0kb downstream 5.0kb downstream 7067 true Chr3: 6165449-6172515 Arabidopsis thaliana
AT3G18020 5.0kb downstream 5.0kb downstream 5000 false Chr3: 6167516-6172515 Arabidopsis thaliana
AT3G18020 10.0kb upstream 10.0kb upstream 12067 true Chr3: 6155449-6167515 Arabidopsis thaliana
AT3G18020 10.0kb upstream 10.0kb upstream 10000 false Chr3: 6155449-6165448 Arabidopsis thaliana
AT3G18020 10.0kb downstream 10.0kb downstream 12067 true Chr3: 6165449-6177515 Arabidopsis thaliana
AT3G18020 10.0kb downstream 10.0kb downstream 10000 false Chr3: 6167516-6177515 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370066 5261 Brassicaceae View MSA
123833308 5264 Brassicales-Malvales View MSA
124339952 5266 SBM View MSA
124237059 5268 Malvidae View MSA
124068854 5270 Rosid View MSA
123739048 5271 Pentapetalae View MSA
122788284 5272 Eudicot View MSA
122041778 5273 Angiosperm View MSA
121309888 5274 Embryophyte View MSA
123347524 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.711       High
cufflinks 2.015        
cufflinks 1.452       Low
cufflinks 2.239        
cufflinks 1.668        
cufflinks 1.875        

0 Strain