Gene : AT3G17800 A. thaliana TAIR10
Defline:  (1 of 8) PF05542 - Protein of unknown function (DUF760) (DUF760) Genomic Order:  1837
Name:  ? AT3G17800 Secondary Identifier:  ? PAC:19661706
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G17800 0.5kb upstream 0.5kb upstream 2542 true Chr3: 6091110-6093651 Arabidopsis thaliana
AT3G17800 0.5kb upstream 0.5kb upstream 500 false Chr3: 6093152-6093651 Arabidopsis thaliana
AT3G17800 0.5kb downstream 0.5kb downstream 2542 true Chr3: 6090610-6093151 Arabidopsis thaliana
AT3G17800 0.5kb downstream 0.5kb downstream 500 false Chr3: 6090610-6091109 Arabidopsis thaliana
AT3G17800 1.0kb upstream 1.0kb upstream 3042 true Chr3: 6091110-6094151 Arabidopsis thaliana
AT3G17800 1.0kb upstream 1.0kb upstream 1000 false Chr3: 6093152-6094151 Arabidopsis thaliana
AT3G17800 1.0kb downstream 1.0kb downstream 3042 true Chr3: 6090110-6093151 Arabidopsis thaliana
AT3G17800 1.0kb downstream 1.0kb downstream 1000 false Chr3: 6090110-6091109 Arabidopsis thaliana
AT3G17800 2.0kb upstream 2.0kb upstream 4042 true Chr3: 6091110-6095151 Arabidopsis thaliana
AT3G17800 2.0kb upstream 2.0kb upstream 2000 false Chr3: 6093152-6095151 Arabidopsis thaliana
AT3G17800 2.0kb downstream 2.0kb downstream 4042 true Chr3: 6089110-6093151 Arabidopsis thaliana
AT3G17800 2.0kb downstream 2.0kb downstream 2000 false Chr3: 6089110-6091109 Arabidopsis thaliana
AT3G17800 5.0kb upstream 5.0kb upstream 7042 true Chr3: 6091110-6098151 Arabidopsis thaliana
AT3G17800 5.0kb upstream 5.0kb upstream 5000 false Chr3: 6093152-6098151 Arabidopsis thaliana
AT3G17800 5.0kb downstream 5.0kb downstream 7042 true Chr3: 6086110-6093151 Arabidopsis thaliana
AT3G17800 5.0kb downstream 5.0kb downstream 5000 false Chr3: 6086110-6091109 Arabidopsis thaliana
AT3G17800 10.0kb upstream 10.0kb upstream 12042 true Chr3: 6091110-6103151 Arabidopsis thaliana
AT3G17800 10.0kb upstream 10.0kb upstream 10000 false Chr3: 6093152-6103151 Arabidopsis thaliana
AT3G17800 10.0kb downstream 10.0kb downstream 12042 true Chr3: 6081110-6093151 Arabidopsis thaliana
AT3G17800 10.0kb downstream 10.0kb downstream 10000 false Chr3: 6081110-6091109 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364866 5261 Brassicaceae View MSA
123836185 5264 Brassicales-Malvales View MSA
124344586 5266 SBM View MSA
124241762 5268 Malvidae View MSA
124062530 5270 Rosid View MSA
123743837 5271 Pentapetalae View MSA
122792166 5272 Eudicot View MSA
122045353 5273 Angiosperm View MSA
121310438 5274 Embryophyte View MSA
123428654 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.567       Low
cufflinks 69.703     High High
cufflinks 21.338        
cufflinks 39.915     High  
cufflinks 31.532     High  
cufflinks 48.998     High  

0 Strain