Gene : AT3G17780 A. thaliana TAIR10
Defline:  (1 of 2) PTHR12701:SF20 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MIG5 Genomic Order:  1835
Name:  ? AT3G17780 Secondary Identifier:  ? PAC:19659394
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G17780 0.5kb upstream 0.5kb upstream 1959 true Chr3: 6086413-6088371 Arabidopsis thaliana
AT3G17780 0.5kb upstream 0.5kb upstream 500 false Chr3: 6086413-6086912 Arabidopsis thaliana
AT3G17780 0.5kb downstream 0.5kb downstream 1959 true Chr3: 6086913-6088871 Arabidopsis thaliana
AT3G17780 0.5kb downstream 0.5kb downstream 500 false Chr3: 6088372-6088871 Arabidopsis thaliana
AT3G17780 1.0kb upstream 1.0kb upstream 2459 true Chr3: 6085913-6088371 Arabidopsis thaliana
AT3G17780 1.0kb upstream 1.0kb upstream 1000 false Chr3: 6085913-6086912 Arabidopsis thaliana
AT3G17780 1.0kb downstream 1.0kb downstream 2459 true Chr3: 6086913-6089371 Arabidopsis thaliana
AT3G17780 1.0kb downstream 1.0kb downstream 1000 false Chr3: 6088372-6089371 Arabidopsis thaliana
AT3G17780 2.0kb upstream 2.0kb upstream 3459 true Chr3: 6084913-6088371 Arabidopsis thaliana
AT3G17780 2.0kb upstream 2.0kb upstream 2000 false Chr3: 6084913-6086912 Arabidopsis thaliana
AT3G17780 2.0kb downstream 2.0kb downstream 3459 true Chr3: 6086913-6090371 Arabidopsis thaliana
AT3G17780 2.0kb downstream 2.0kb downstream 2000 false Chr3: 6088372-6090371 Arabidopsis thaliana
AT3G17780 5.0kb upstream 5.0kb upstream 6459 true Chr3: 6081913-6088371 Arabidopsis thaliana
AT3G17780 5.0kb upstream 5.0kb upstream 5000 false Chr3: 6081913-6086912 Arabidopsis thaliana
AT3G17780 5.0kb downstream 5.0kb downstream 6459 true Chr3: 6086913-6093371 Arabidopsis thaliana
AT3G17780 5.0kb downstream 5.0kb downstream 5000 false Chr3: 6088372-6093371 Arabidopsis thaliana
AT3G17780 10.0kb upstream 10.0kb upstream 11459 true Chr3: 6076913-6088371 Arabidopsis thaliana
AT3G17780 10.0kb upstream 10.0kb upstream 10000 false Chr3: 6076913-6086912 Arabidopsis thaliana
AT3G17780 10.0kb downstream 10.0kb downstream 11459 true Chr3: 6086913-6098371 Arabidopsis thaliana
AT3G17780 10.0kb downstream 10.0kb downstream 10000 false Chr3: 6088372-6098371 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380322 5261 Brassicaceae View MSA
123836533 5264 Brassicales-Malvales View MSA
124342792 5266 SBM View MSA
124251721 5268 Malvidae View MSA
124061614 5270 Rosid View MSA
123738808 5271 Pentapetalae View MSA
122789098 5272 Eudicot View MSA
122042109 5273 Angiosperm View MSA
121344883 5274 Embryophyte View MSA
123380122 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.954        
cufflinks 18.134       High
cufflinks 11.699        
cufflinks 16.335        
cufflinks 10.23       Low
cufflinks 18.282       High

0 Strain