Gene : AT3G57790 A. thaliana TAIR10
Defline:  (1 of 1) 3.2.1.82 - Exo-poly-alpha-galacturonosidase / Exopolygalacturanosidase Genomic Order:  4834
Name:  ? AT3G57790 Secondary Identifier:  ? PAC:19664694
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G57790 0.5kb upstream 0.5kb upstream 2738 true Chr3: 21405387-21408124 Arabidopsis thaliana
AT3G57790 0.5kb upstream 0.5kb upstream 500 false Chr3: 21407625-21408124 Arabidopsis thaliana
AT3G57790 0.5kb downstream 0.5kb downstream 2738 true Chr3: 21404887-21407624 Arabidopsis thaliana
AT3G57790 0.5kb downstream 0.5kb downstream 500 false Chr3: 21404887-21405386 Arabidopsis thaliana
AT3G57790 1.0kb upstream 1.0kb upstream 3238 true Chr3: 21405387-21408624 Arabidopsis thaliana
AT3G57790 1.0kb upstream 1.0kb upstream 1000 false Chr3: 21407625-21408624 Arabidopsis thaliana
AT3G57790 1.0kb downstream 1.0kb downstream 3238 true Chr3: 21404387-21407624 Arabidopsis thaliana
AT3G57790 1.0kb downstream 1.0kb downstream 1000 false Chr3: 21404387-21405386 Arabidopsis thaliana
AT3G57790 2.0kb upstream 2.0kb upstream 4238 true Chr3: 21405387-21409624 Arabidopsis thaliana
AT3G57790 2.0kb upstream 2.0kb upstream 2000 false Chr3: 21407625-21409624 Arabidopsis thaliana
AT3G57790 2.0kb downstream 2.0kb downstream 4238 true Chr3: 21403387-21407624 Arabidopsis thaliana
AT3G57790 2.0kb downstream 2.0kb downstream 2000 false Chr3: 21403387-21405386 Arabidopsis thaliana
AT3G57790 5.0kb upstream 5.0kb upstream 7238 true Chr3: 21405387-21412624 Arabidopsis thaliana
AT3G57790 5.0kb upstream 5.0kb upstream 5000 false Chr3: 21407625-21412624 Arabidopsis thaliana
AT3G57790 5.0kb downstream 5.0kb downstream 7238 true Chr3: 21400387-21407624 Arabidopsis thaliana
AT3G57790 5.0kb downstream 5.0kb downstream 5000 false Chr3: 21400387-21405386 Arabidopsis thaliana
AT3G57790 10.0kb upstream 10.0kb upstream 12238 true Chr3: 21405387-21417624 Arabidopsis thaliana
AT3G57790 10.0kb upstream 10.0kb upstream 10000 false Chr3: 21407625-21417624 Arabidopsis thaliana
AT3G57790 10.0kb downstream 10.0kb downstream 12238 true Chr3: 21395387-21407624 Arabidopsis thaliana
AT3G57790 10.0kb downstream 10.0kb downstream 10000 false Chr3: 21395387-21405386 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369434 5261 Brassicaceae View MSA
123829316 5264 Brassicales-Malvales View MSA
124344203 5266 SBM View MSA
124248778 5268 Malvidae View MSA
124067071 5270 Rosid View MSA
123738878 5271 Pentapetalae View MSA
122786031 5272 Eudicot View MSA
122041553 5273 Angiosperm View MSA
121343864 5274 Embryophyte View MSA
123425677 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.379       High
cufflinks 4.571        
cufflinks 6.001        
cufflinks 4.848        
cufflinks 5.921        
cufflinks 4.208       Low

0 Strain