Gene : AT3G57780 A. thaliana TAIR10
Defline:  (1 of 3) PTHR31344:SF4 - NUCLEOLAR PROTEIN GAR2-LIKE PROTEIN Genomic Order:  4832
Name:  ? AT3G57780 Secondary Identifier:  ? PAC:19662170
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G57780 0.5kb upstream 0.5kb upstream 3634 true Chr3: 21399766-21403399 Arabidopsis thaliana
AT3G57780 0.5kb upstream 0.5kb upstream 500 false Chr3: 21402900-21403399 Arabidopsis thaliana
AT3G57780 0.5kb downstream 0.5kb downstream 3634 true Chr3: 21399266-21402899 Arabidopsis thaliana
AT3G57780 0.5kb downstream 0.5kb downstream 500 false Chr3: 21399266-21399765 Arabidopsis thaliana
AT3G57780 1.0kb upstream 1.0kb upstream 4134 true Chr3: 21399766-21403899 Arabidopsis thaliana
AT3G57780 1.0kb upstream 1.0kb upstream 1000 false Chr3: 21402900-21403899 Arabidopsis thaliana
AT3G57780 1.0kb downstream 1.0kb downstream 4134 true Chr3: 21398766-21402899 Arabidopsis thaliana
AT3G57780 1.0kb downstream 1.0kb downstream 1000 false Chr3: 21398766-21399765 Arabidopsis thaliana
AT3G57780 2.0kb upstream 2.0kb upstream 5134 true Chr3: 21399766-21404899 Arabidopsis thaliana
AT3G57780 2.0kb upstream 2.0kb upstream 2000 false Chr3: 21402900-21404899 Arabidopsis thaliana
AT3G57780 2.0kb downstream 2.0kb downstream 5134 true Chr3: 21397766-21402899 Arabidopsis thaliana
AT3G57780 2.0kb downstream 2.0kb downstream 2000 false Chr3: 21397766-21399765 Arabidopsis thaliana
AT3G57780 5.0kb upstream 5.0kb upstream 8134 true Chr3: 21399766-21407899 Arabidopsis thaliana
AT3G57780 5.0kb upstream 5.0kb upstream 5000 false Chr3: 21402900-21407899 Arabidopsis thaliana
AT3G57780 5.0kb downstream 5.0kb downstream 8134 true Chr3: 21394766-21402899 Arabidopsis thaliana
AT3G57780 5.0kb downstream 5.0kb downstream 5000 false Chr3: 21394766-21399765 Arabidopsis thaliana
AT3G57780 10.0kb upstream 10.0kb upstream 13134 true Chr3: 21399766-21412899 Arabidopsis thaliana
AT3G57780 10.0kb upstream 10.0kb upstream 10000 false Chr3: 21402900-21412899 Arabidopsis thaliana
AT3G57780 10.0kb downstream 10.0kb downstream 13134 true Chr3: 21389766-21402899 Arabidopsis thaliana
AT3G57780 10.0kb downstream 10.0kb downstream 10000 false Chr3: 21389766-21399765 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366837 5261 Brassicaceae View MSA
123836588 5264 Brassicales-Malvales View MSA
124338356 5266 SBM View MSA
124240822 5268 Malvidae View MSA
124068078 5270 Rosid View MSA
123737150 5271 Pentapetalae View MSA
122789303 5272 Eudicot View MSA
122047501 5273 Angiosperm View MSA
121349213 5274 Embryophyte View MSA
123425563 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.237        
cufflinks 28.758       High
cufflinks 5.575        
cufflinks 20.649        
cufflinks 4.592       Low
cufflinks 21.859        

0 Strain