Gene : SIP2 A. thaliana TAIR10
Primary Identifier:  ? AT3G57520 Defline:  (1 of 4) K06617 - raffinose synthase (E2.4.1.82)
Genomic Order:  4806 Name:  ? AT3G57520
Secondary Identifier:  ? PAC:19662612
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5337 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G57520 0.5kb upstream 0.5kb upstream 4894 true Chr3: 21288765-21293658 Arabidopsis thaliana
AT3G57520 0.5kb upstream 0.5kb upstream 500 false Chr3: 21293159-21293658 Arabidopsis thaliana
AT3G57520 0.5kb downstream 0.5kb downstream 4894 true Chr3: 21288265-21293158 Arabidopsis thaliana
AT3G57520 0.5kb downstream 0.5kb downstream 500 false Chr3: 21288265-21288764 Arabidopsis thaliana
AT3G57520 1.0kb upstream 1.0kb upstream 5394 true Chr3: 21288765-21294158 Arabidopsis thaliana
AT3G57520 1.0kb upstream 1.0kb upstream 1000 false Chr3: 21293159-21294158 Arabidopsis thaliana
AT3G57520 1.0kb downstream 1.0kb downstream 5394 true Chr3: 21287765-21293158 Arabidopsis thaliana
AT3G57520 1.0kb downstream 1.0kb downstream 1000 false Chr3: 21287765-21288764 Arabidopsis thaliana
AT3G57520 2.0kb upstream 2.0kb upstream 6394 true Chr3: 21288765-21295158 Arabidopsis thaliana
AT3G57520 2.0kb upstream 2.0kb upstream 2000 false Chr3: 21293159-21295158 Arabidopsis thaliana
AT3G57520 2.0kb downstream 2.0kb downstream 6394 true Chr3: 21286765-21293158 Arabidopsis thaliana
AT3G57520 2.0kb downstream 2.0kb downstream 2000 false Chr3: 21286765-21288764 Arabidopsis thaliana
AT3G57520 5.0kb upstream 5.0kb upstream 9394 true Chr3: 21288765-21298158 Arabidopsis thaliana
AT3G57520 5.0kb upstream 5.0kb upstream 5000 false Chr3: 21293159-21298158 Arabidopsis thaliana
AT3G57520 5.0kb downstream 5.0kb downstream 9394 true Chr3: 21283765-21293158 Arabidopsis thaliana
AT3G57520 5.0kb downstream 5.0kb downstream 5000 false Chr3: 21283765-21288764 Arabidopsis thaliana
AT3G57520 10.0kb upstream 10.0kb upstream 14394 true Chr3: 21288765-21303158 Arabidopsis thaliana
AT3G57520 10.0kb upstream 10.0kb upstream 10000 false Chr3: 21293159-21303158 Arabidopsis thaliana
AT3G57520 10.0kb downstream 10.0kb downstream 14394 true Chr3: 21278765-21293158 Arabidopsis thaliana
AT3G57520 10.0kb downstream 10.0kb downstream 10000 false Chr3: 21278765-21288764 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372052 5261 Brassicaceae View MSA
123831242 5264 Brassicales-Malvales View MSA
124344017 5266 SBM View MSA
124249240 5268 Malvidae View MSA
124064190 5270 Rosid View MSA
123740319 5271 Pentapetalae View MSA
122793686 5272 Eudicot View MSA
122044208 5273 Angiosperm View MSA
123429020 5275 Viridiplantae View MSA
121345613 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.458        
cufflinks 13.062       Low
cufflinks 27.652     High  
cufflinks 19.18        
cufflinks 34.013     High High
cufflinks 16.484        

0 Strain