Gene : AT3G57400 A. thaliana TAIR10
Defline:  (1 of 2) PTHR34960:SF1 - EMB Genomic Order:  4794
Name:  ? AT3G57400 Secondary Identifier:  ? PAC:19658777
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G57400 0.5kb upstream 0.5kb upstream 2296 true Chr3: 21237933-21240228 Arabidopsis thaliana
AT3G57400 0.5kb upstream 0.5kb upstream 500 false Chr3: 21237933-21238432 Arabidopsis thaliana
AT3G57400 0.5kb downstream 0.5kb downstream 2296 true Chr3: 21238433-21240728 Arabidopsis thaliana
AT3G57400 0.5kb downstream 0.5kb downstream 500 false Chr3: 21240229-21240728 Arabidopsis thaliana
AT3G57400 1.0kb upstream 1.0kb upstream 2796 true Chr3: 21237433-21240228 Arabidopsis thaliana
AT3G57400 1.0kb upstream 1.0kb upstream 1000 false Chr3: 21237433-21238432 Arabidopsis thaliana
AT3G57400 1.0kb downstream 1.0kb downstream 2796 true Chr3: 21238433-21241228 Arabidopsis thaliana
AT3G57400 1.0kb downstream 1.0kb downstream 1000 false Chr3: 21240229-21241228 Arabidopsis thaliana
AT3G57400 2.0kb upstream 2.0kb upstream 3796 true Chr3: 21236433-21240228 Arabidopsis thaliana
AT3G57400 2.0kb upstream 2.0kb upstream 2000 false Chr3: 21236433-21238432 Arabidopsis thaliana
AT3G57400 2.0kb downstream 2.0kb downstream 3796 true Chr3: 21238433-21242228 Arabidopsis thaliana
AT3G57400 2.0kb downstream 2.0kb downstream 2000 false Chr3: 21240229-21242228 Arabidopsis thaliana
AT3G57400 5.0kb upstream 5.0kb upstream 6796 true Chr3: 21233433-21240228 Arabidopsis thaliana
AT3G57400 5.0kb upstream 5.0kb upstream 5000 false Chr3: 21233433-21238432 Arabidopsis thaliana
AT3G57400 5.0kb downstream 5.0kb downstream 6796 true Chr3: 21238433-21245228 Arabidopsis thaliana
AT3G57400 5.0kb downstream 5.0kb downstream 5000 false Chr3: 21240229-21245228 Arabidopsis thaliana
AT3G57400 10.0kb upstream 10.0kb upstream 11796 true Chr3: 21228433-21240228 Arabidopsis thaliana
AT3G57400 10.0kb upstream 10.0kb upstream 10000 false Chr3: 21228433-21238432 Arabidopsis thaliana
AT3G57400 10.0kb downstream 10.0kb downstream 11796 true Chr3: 21238433-21250228 Arabidopsis thaliana
AT3G57400 10.0kb downstream 10.0kb downstream 10000 false Chr3: 21240229-21250228 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379114 5261 Brassicaceae View MSA
123833163 5264 Brassicales-Malvales View MSA
124350076 5266 SBM View MSA
124243806 5268 Malvidae View MSA
124063273 5270 Rosid View MSA
123749138 5271 Pentapetalae View MSA
122786545 5272 Eudicot View MSA
122045001 5273 Angiosperm View MSA
121350559 5274 Embryophyte View MSA
123381791 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.044        
cufflinks 12.659       Low
cufflinks 23.111        
cufflinks 17.309        
cufflinks 24.065        
cufflinks 12.715       Low

0 Strain