Gene : AGL18 A. thaliana TAIR10
Primary Identifier:  ? AT3G57390 Defline:  (1 of 1) PTHR11945//PTHR11945:SF175 - MADS BOX PROTEIN // AGAMOUS-LIKE MADS-BOX PROTEIN AGL18
Genomic Order:  4793 Name:  ? AT3G57390
Secondary Identifier:  ? PAC:19659472
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G57390 0.5kb upstream 0.5kb upstream 2711 true Chr3: 21233201-21235911 Arabidopsis thaliana
AT3G57390 0.5kb upstream 0.5kb upstream 500 false Chr3: 21233201-21233700 Arabidopsis thaliana
AT3G57390 0.5kb downstream 0.5kb downstream 2711 true Chr3: 21233701-21236411 Arabidopsis thaliana
AT3G57390 0.5kb downstream 0.5kb downstream 500 false Chr3: 21235912-21236411 Arabidopsis thaliana
AT3G57390 1.0kb upstream 1.0kb upstream 3211 true Chr3: 21232701-21235911 Arabidopsis thaliana
AT3G57390 1.0kb upstream 1.0kb upstream 1000 false Chr3: 21232701-21233700 Arabidopsis thaliana
AT3G57390 1.0kb downstream 1.0kb downstream 3211 true Chr3: 21233701-21236911 Arabidopsis thaliana
AT3G57390 1.0kb downstream 1.0kb downstream 1000 false Chr3: 21235912-21236911 Arabidopsis thaliana
AT3G57390 2.0kb upstream 2.0kb upstream 4211 true Chr3: 21231701-21235911 Arabidopsis thaliana
AT3G57390 2.0kb upstream 2.0kb upstream 2000 false Chr3: 21231701-21233700 Arabidopsis thaliana
AT3G57390 2.0kb downstream 2.0kb downstream 4211 true Chr3: 21233701-21237911 Arabidopsis thaliana
AT3G57390 2.0kb downstream 2.0kb downstream 2000 false Chr3: 21235912-21237911 Arabidopsis thaliana
AT3G57390 5.0kb upstream 5.0kb upstream 7211 true Chr3: 21228701-21235911 Arabidopsis thaliana
AT3G57390 5.0kb upstream 5.0kb upstream 5000 false Chr3: 21228701-21233700 Arabidopsis thaliana
AT3G57390 5.0kb downstream 5.0kb downstream 7211 true Chr3: 21233701-21240911 Arabidopsis thaliana
AT3G57390 5.0kb downstream 5.0kb downstream 5000 false Chr3: 21235912-21240911 Arabidopsis thaliana
AT3G57390 10.0kb upstream 10.0kb upstream 12211 true Chr3: 21223701-21235911 Arabidopsis thaliana
AT3G57390 10.0kb upstream 10.0kb upstream 10000 false Chr3: 21223701-21233700 Arabidopsis thaliana
AT3G57390 10.0kb downstream 10.0kb downstream 12211 true Chr3: 21233701-21245911 Arabidopsis thaliana
AT3G57390 10.0kb downstream 10.0kb downstream 10000 false Chr3: 21235912-21245911 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367893 5261 Brassicaceae View MSA
123829772 5264 Brassicales-Malvales View MSA
124342991 5266 SBM View MSA
124253386 5268 Malvidae View MSA
124074630 5270 Rosid View MSA
123753664 5271 Pentapetalae View MSA
122797561 5272 Eudicot View MSA
122050867 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.115        
cufflinks 2.808       High
cufflinks 1.907       Low
cufflinks 2.699       High
cufflinks 1.976        
cufflinks 2.332        

0 Strain