Gene : NRPE5 A. thaliana TAIR10
Primary Identifier:  ? AT3G57080 Defline:  (1 of 1) PTHR10535//PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 // DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED
Genomic Order:  4762 Name:  ? AT3G57080
Secondary Identifier:  ? PAC:19658423
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0 Pathways

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G57080 0.5kb upstream 0.5kb upstream 2280 true Chr3: 21125357-21127636 Arabidopsis thaliana
AT3G57080 0.5kb upstream 0.5kb upstream 500 false Chr3: 21125357-21125856 Arabidopsis thaliana
AT3G57080 0.5kb downstream 0.5kb downstream 2280 true Chr3: 21125857-21128136 Arabidopsis thaliana
AT3G57080 0.5kb downstream 0.5kb downstream 500 false Chr3: 21127637-21128136 Arabidopsis thaliana
AT3G57080 1.0kb upstream 1.0kb upstream 2780 true Chr3: 21124857-21127636 Arabidopsis thaliana
AT3G57080 1.0kb upstream 1.0kb upstream 1000 false Chr3: 21124857-21125856 Arabidopsis thaliana
AT3G57080 1.0kb downstream 1.0kb downstream 2780 true Chr3: 21125857-21128636 Arabidopsis thaliana
AT3G57080 1.0kb downstream 1.0kb downstream 1000 false Chr3: 21127637-21128636 Arabidopsis thaliana
AT3G57080 2.0kb upstream 2.0kb upstream 3780 true Chr3: 21123857-21127636 Arabidopsis thaliana
AT3G57080 2.0kb upstream 2.0kb upstream 2000 false Chr3: 21123857-21125856 Arabidopsis thaliana
AT3G57080 2.0kb downstream 2.0kb downstream 3780 true Chr3: 21125857-21129636 Arabidopsis thaliana
AT3G57080 2.0kb downstream 2.0kb downstream 2000 false Chr3: 21127637-21129636 Arabidopsis thaliana
AT3G57080 5.0kb upstream 5.0kb upstream 6780 true Chr3: 21120857-21127636 Arabidopsis thaliana
AT3G57080 5.0kb upstream 5.0kb upstream 5000 false Chr3: 21120857-21125856 Arabidopsis thaliana
AT3G57080 5.0kb downstream 5.0kb downstream 6780 true Chr3: 21125857-21132636 Arabidopsis thaliana
AT3G57080 5.0kb downstream 5.0kb downstream 5000 false Chr3: 21127637-21132636 Arabidopsis thaliana
AT3G57080 10.0kb upstream 10.0kb upstream 11780 true Chr3: 21115857-21127636 Arabidopsis thaliana
AT3G57080 10.0kb upstream 10.0kb upstream 10000 false Chr3: 21115857-21125856 Arabidopsis thaliana
AT3G57080 10.0kb downstream 10.0kb downstream 11780 true Chr3: 21125857-21137636 Arabidopsis thaliana
AT3G57080 10.0kb downstream 10.0kb downstream 10000 false Chr3: 21127637-21137636 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360457 5261 Brassicaceae View MSA
123828631 5264 Brassicales-Malvales View MSA
124349790 5266 SBM View MSA
124240672 5268 Malvidae View MSA
124067082 5270 Rosid View MSA
123741650 5271 Pentapetalae View MSA
122792617 5272 Eudicot View MSA
122051300 5273 Angiosperm View MSA
121352511 5274 Embryophyte View MSA
123382830 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.161        
cufflinks 8.712       High
cufflinks 7.122        
cufflinks 8.591       High
cufflinks 6.793       Low
cufflinks 7.659        

0 Strain