Gene : AT3G56500 A. thaliana TAIR10
Defline:  (1 of 1) PTHR33132//PTHR33132:SF13 - FAMILY NOT NAMED // SERINE-RICH PROTEIN-LIKE PROTEIN Genomic Order:  4701
Name:  ? AT3G56500 Secondary Identifier:  ? PAC:19663629
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G56500 0.5kb upstream 0.5kb upstream 833 true Chr3: 20943138-20943970 Arabidopsis thaliana
AT3G56500 0.5kb upstream 0.5kb upstream 500 false Chr3: 20943138-20943637 Arabidopsis thaliana
AT3G56500 0.5kb downstream 0.5kb downstream 833 true Chr3: 20943638-20944470 Arabidopsis thaliana
AT3G56500 0.5kb downstream 0.5kb downstream 500 false Chr3: 20943971-20944470 Arabidopsis thaliana
AT3G56500 1.0kb upstream 1.0kb upstream 1333 true Chr3: 20942638-20943970 Arabidopsis thaliana
AT3G56500 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20942638-20943637 Arabidopsis thaliana
AT3G56500 1.0kb downstream 1.0kb downstream 1333 true Chr3: 20943638-20944970 Arabidopsis thaliana
AT3G56500 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20943971-20944970 Arabidopsis thaliana
AT3G56500 2.0kb upstream 2.0kb upstream 2333 true Chr3: 20941638-20943970 Arabidopsis thaliana
AT3G56500 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20941638-20943637 Arabidopsis thaliana
AT3G56500 2.0kb downstream 2.0kb downstream 2333 true Chr3: 20943638-20945970 Arabidopsis thaliana
AT3G56500 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20943971-20945970 Arabidopsis thaliana
AT3G56500 5.0kb upstream 5.0kb upstream 5333 true Chr3: 20938638-20943970 Arabidopsis thaliana
AT3G56500 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20938638-20943637 Arabidopsis thaliana
AT3G56500 5.0kb downstream 5.0kb downstream 5333 true Chr3: 20943638-20948970 Arabidopsis thaliana
AT3G56500 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20943971-20948970 Arabidopsis thaliana
AT3G56500 10.0kb upstream 10.0kb upstream 10333 true Chr3: 20933638-20943970 Arabidopsis thaliana
AT3G56500 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20933638-20943637 Arabidopsis thaliana
AT3G56500 10.0kb downstream 10.0kb downstream 10333 true Chr3: 20943638-20953970 Arabidopsis thaliana
AT3G56500 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20943971-20953970 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373098 5261 Brassicaceae View MSA
123800492 5264 Brassicales-Malvales View MSA
124297903 5266 SBM View MSA
124149680 5268 Malvidae View MSA
123875438 5270 Rosid View MSA
123459256 5271 Pentapetalae View MSA
122494650 5272 Eudicot View MSA
122050175 5273 Angiosperm View MSA
121348989 5274 Embryophyte View MSA
123381114 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.059       High
cufflinks 0.323     Low  
cufflinks 0.892        
cufflinks 0.653        
cufflinks 2.242       High
cufflinks 0.232     Low Low

0 Strain