Gene : AT3G56680 A. thaliana TAIR10
Defline:  (1 of 4) PTHR15672//PTHR15672:SF15 - CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN // EXPRESSED PROTEIN Genomic Order:  4719
Name:  ? AT3G56680 Secondary Identifier:  ? PAC:19658655
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G56680 0.5kb upstream 0.5kb upstream 2898 true Chr3: 20990780-20993677 Arabidopsis thaliana
AT3G56680 0.5kb upstream 0.5kb upstream 500 false Chr3: 20990780-20991279 Arabidopsis thaliana
AT3G56680 0.5kb downstream 0.5kb downstream 2898 true Chr3: 20991280-20994177 Arabidopsis thaliana
AT3G56680 0.5kb downstream 0.5kb downstream 500 false Chr3: 20993678-20994177 Arabidopsis thaliana
AT3G56680 1.0kb upstream 1.0kb upstream 3398 true Chr3: 20990280-20993677 Arabidopsis thaliana
AT3G56680 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20990280-20991279 Arabidopsis thaliana
AT3G56680 1.0kb downstream 1.0kb downstream 3398 true Chr3: 20991280-20994677 Arabidopsis thaliana
AT3G56680 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20993678-20994677 Arabidopsis thaliana
AT3G56680 2.0kb upstream 2.0kb upstream 4398 true Chr3: 20989280-20993677 Arabidopsis thaliana
AT3G56680 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20989280-20991279 Arabidopsis thaliana
AT3G56680 2.0kb downstream 2.0kb downstream 4398 true Chr3: 20991280-20995677 Arabidopsis thaliana
AT3G56680 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20993678-20995677 Arabidopsis thaliana
AT3G56680 5.0kb upstream 5.0kb upstream 7398 true Chr3: 20986280-20993677 Arabidopsis thaliana
AT3G56680 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20986280-20991279 Arabidopsis thaliana
AT3G56680 5.0kb downstream 5.0kb downstream 7398 true Chr3: 20991280-20998677 Arabidopsis thaliana
AT3G56680 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20993678-20998677 Arabidopsis thaliana
AT3G56680 10.0kb upstream 10.0kb upstream 12398 true Chr3: 20981280-20993677 Arabidopsis thaliana
AT3G56680 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20981280-20991279 Arabidopsis thaliana
AT3G56680 10.0kb downstream 10.0kb downstream 12398 true Chr3: 20991280-21003677 Arabidopsis thaliana
AT3G56680 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20993678-21003677 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361837 5261 Brassicaceae View MSA
123831794 5264 Brassicales-Malvales View MSA
124340288 5266 SBM View MSA
124241003 5268 Malvidae View MSA
124070671 5270 Rosid View MSA
123753124 5271 Pentapetalae View MSA
122794713 5272 Eudicot View MSA
122048574 5273 Angiosperm View MSA
123428874 5275 Viridiplantae View MSA
121347562 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 39.096     High High
cufflinks 31.974     High  
cufflinks 36.71     High  
cufflinks 30.273     High  
cufflinks 29.408     High  
cufflinks 23.579       Low

0 Strain