Gene : AT3G56320 A. thaliana TAIR10
Defline:  (1 of 3) PTHR23092//PTHR23092:SF30 - TOPOISOMERASE-RELATED PROTEIN // NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN-RELATED Genomic Order:  4683
Name:  ? AT3G56320 Secondary Identifier:  ? PAC:19659522
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G56320 0.5kb upstream 0.5kb upstream 4263 true Chr3: 20885894-20890156 Arabidopsis thaliana
AT3G56320 0.5kb upstream 0.5kb upstream 500 false Chr3: 20889657-20890156 Arabidopsis thaliana
AT3G56320 0.5kb downstream 0.5kb downstream 4263 true Chr3: 20885394-20889656 Arabidopsis thaliana
AT3G56320 0.5kb downstream 0.5kb downstream 500 false Chr3: 20885394-20885893 Arabidopsis thaliana
AT3G56320 1.0kb upstream 1.0kb upstream 4763 true Chr3: 20885894-20890656 Arabidopsis thaliana
AT3G56320 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20889657-20890656 Arabidopsis thaliana
AT3G56320 1.0kb downstream 1.0kb downstream 4763 true Chr3: 20884894-20889656 Arabidopsis thaliana
AT3G56320 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20884894-20885893 Arabidopsis thaliana
AT3G56320 2.0kb upstream 2.0kb upstream 5763 true Chr3: 20885894-20891656 Arabidopsis thaliana
AT3G56320 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20889657-20891656 Arabidopsis thaliana
AT3G56320 2.0kb downstream 2.0kb downstream 5763 true Chr3: 20883894-20889656 Arabidopsis thaliana
AT3G56320 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20883894-20885893 Arabidopsis thaliana
AT3G56320 5.0kb upstream 5.0kb upstream 8763 true Chr3: 20885894-20894656 Arabidopsis thaliana
AT3G56320 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20889657-20894656 Arabidopsis thaliana
AT3G56320 5.0kb downstream 5.0kb downstream 8763 true Chr3: 20880894-20889656 Arabidopsis thaliana
AT3G56320 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20880894-20885893 Arabidopsis thaliana
AT3G56320 10.0kb upstream 10.0kb upstream 13763 true Chr3: 20885894-20899656 Arabidopsis thaliana
AT3G56320 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20889657-20899656 Arabidopsis thaliana
AT3G56320 10.0kb downstream 10.0kb downstream 13763 true Chr3: 20875894-20889656 Arabidopsis thaliana
AT3G56320 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20875894-20885893 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376412 5261 Brassicaceae View MSA
123828925 5264 Brassicales-Malvales View MSA
124350387 5266 SBM View MSA
124251652 5268 Malvidae View MSA
124069788 5270 Rosid View MSA
123744457 5271 Pentapetalae View MSA
122791987 5272 Eudicot View MSA
122043315 5273 Angiosperm View MSA
121310107 5274 Embryophyte View MSA
123428025 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.78       Low
cufflinks 5.457        
cufflinks 2.843       Low
cufflinks 6.156        
cufflinks 5.408        
cufflinks 5.419        

0 Strain