Gene : AT3G56230 A. thaliana TAIR10
Defline:  (1 of 16) K10523 - speckle-type POZ protein (SPOP) Genomic Order:  4675
Name:  ? AT3G56230 Secondary Identifier:  ? PAC:19661331
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G56230 0.5kb upstream 0.5kb upstream 1988 true Chr3: 20860778-20862765 Arabidopsis thaliana
AT3G56230 0.5kb upstream 0.5kb upstream 500 false Chr3: 20862266-20862765 Arabidopsis thaliana
AT3G56230 0.5kb downstream 0.5kb downstream 1988 true Chr3: 20860278-20862265 Arabidopsis thaliana
AT3G56230 0.5kb downstream 0.5kb downstream 500 false Chr3: 20860278-20860777 Arabidopsis thaliana
AT3G56230 1.0kb upstream 1.0kb upstream 2488 true Chr3: 20860778-20863265 Arabidopsis thaliana
AT3G56230 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20862266-20863265 Arabidopsis thaliana
AT3G56230 1.0kb downstream 1.0kb downstream 2488 true Chr3: 20859778-20862265 Arabidopsis thaliana
AT3G56230 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20859778-20860777 Arabidopsis thaliana
AT3G56230 2.0kb upstream 2.0kb upstream 3488 true Chr3: 20860778-20864265 Arabidopsis thaliana
AT3G56230 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20862266-20864265 Arabidopsis thaliana
AT3G56230 2.0kb downstream 2.0kb downstream 3488 true Chr3: 20858778-20862265 Arabidopsis thaliana
AT3G56230 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20858778-20860777 Arabidopsis thaliana
AT3G56230 5.0kb upstream 5.0kb upstream 6488 true Chr3: 20860778-20867265 Arabidopsis thaliana
AT3G56230 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20862266-20867265 Arabidopsis thaliana
AT3G56230 5.0kb downstream 5.0kb downstream 6488 true Chr3: 20855778-20862265 Arabidopsis thaliana
AT3G56230 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20855778-20860777 Arabidopsis thaliana
AT3G56230 10.0kb upstream 10.0kb upstream 11488 true Chr3: 20860778-20872265 Arabidopsis thaliana
AT3G56230 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20862266-20872265 Arabidopsis thaliana
AT3G56230 10.0kb downstream 10.0kb downstream 11488 true Chr3: 20850778-20862265 Arabidopsis thaliana
AT3G56230 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20850778-20860777 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374929 5261 Brassicaceae View MSA
123829370 5264 Brassicales-Malvales View MSA
124338568 5266 SBM View MSA
124240649 5268 Malvidae View MSA
124074113 5270 Rosid View MSA
123752878 5271 Pentapetalae View MSA
122786642 5272 Eudicot View MSA
122047536 5273 Angiosperm View MSA
123429159 5275 Viridiplantae View MSA
121351417 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.174     Low  
cufflinks 0.865        
cufflinks 0.213     Low  
cufflinks 1.66       High
cufflinks 0.149     Low Low
cufflinks 1.715       High

0 Strain