Gene : CCH A. thaliana TAIR10
Primary Identifier:  ? AT3G56240 Defline:  (1 of 2) K07213 - copper chaperone (ATOX1, ATX1, copZ)
Genomic Order:  4676 Name:  ? AT3G56240
Secondary Identifier:  ? PAC:19664214
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G56240 0.5kb upstream 0.5kb upstream 1788 true Chr3: 20863257-20865044 Arabidopsis thaliana
AT3G56240 0.5kb upstream 0.5kb upstream 500 false Chr3: 20864545-20865044 Arabidopsis thaliana
AT3G56240 0.5kb downstream 0.5kb downstream 1788 true Chr3: 20862757-20864544 Arabidopsis thaliana
AT3G56240 0.5kb downstream 0.5kb downstream 500 false Chr3: 20862757-20863256 Arabidopsis thaliana
AT3G56240 1.0kb upstream 1.0kb upstream 2288 true Chr3: 20863257-20865544 Arabidopsis thaliana
AT3G56240 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20864545-20865544 Arabidopsis thaliana
AT3G56240 1.0kb downstream 1.0kb downstream 2288 true Chr3: 20862257-20864544 Arabidopsis thaliana
AT3G56240 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20862257-20863256 Arabidopsis thaliana
AT3G56240 2.0kb upstream 2.0kb upstream 3288 true Chr3: 20863257-20866544 Arabidopsis thaliana
AT3G56240 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20864545-20866544 Arabidopsis thaliana
AT3G56240 2.0kb downstream 2.0kb downstream 3288 true Chr3: 20861257-20864544 Arabidopsis thaliana
AT3G56240 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20861257-20863256 Arabidopsis thaliana
AT3G56240 5.0kb upstream 5.0kb upstream 6288 true Chr3: 20863257-20869544 Arabidopsis thaliana
AT3G56240 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20864545-20869544 Arabidopsis thaliana
AT3G56240 5.0kb downstream 5.0kb downstream 6288 true Chr3: 20858257-20864544 Arabidopsis thaliana
AT3G56240 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20858257-20863256 Arabidopsis thaliana
AT3G56240 10.0kb upstream 10.0kb upstream 11288 true Chr3: 20863257-20874544 Arabidopsis thaliana
AT3G56240 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20864545-20874544 Arabidopsis thaliana
AT3G56240 10.0kb downstream 10.0kb downstream 11288 true Chr3: 20853257-20864544 Arabidopsis thaliana
AT3G56240 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20853257-20863256 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040990 5273 Angiosperm View MSA
122369662 5261 Brassicaceae View MSA
123836936 5264 Brassicales-Malvales View MSA
124343402 5266 SBM View MSA
124250881 5268 Malvidae View MSA
124065552 5270 Rosid View MSA
123743211 5271 Pentapetalae View MSA
122791151 5272 Eudicot View MSA
121351529 5274 Embryophyte View MSA
123424750 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 131.717     High  
cufflinks 298.411     High High
cufflinks 135.353     High  
cufflinks 219.553     High  
cufflinks 138.61     High  
cufflinks 153.765     High  

0 Strain