Gene : AT3G56310 A. thaliana TAIR10
Defline:  (1 of 3) K07407 - alpha-galactosidase (E3.2.1.22B, galA, rafA) Genomic Order:  4682
Name:  ? AT3G56310 Secondary Identifier:  ? PAC:19665084
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY0-1301 Arabidopsis thaliana pathologic  
Athaliana PWY-6527 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G56310 0.5kb upstream 0.5kb upstream 3613 true Chr3: 20882303-20885915 Arabidopsis thaliana
AT3G56310 0.5kb upstream 0.5kb upstream 500 false Chr3: 20882303-20882802 Arabidopsis thaliana
AT3G56310 0.5kb downstream 0.5kb downstream 3613 true Chr3: 20882803-20886415 Arabidopsis thaliana
AT3G56310 0.5kb downstream 0.5kb downstream 500 false Chr3: 20885916-20886415 Arabidopsis thaliana
AT3G56310 1.0kb upstream 1.0kb upstream 4113 true Chr3: 20881803-20885915 Arabidopsis thaliana
AT3G56310 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20881803-20882802 Arabidopsis thaliana
AT3G56310 1.0kb downstream 1.0kb downstream 4113 true Chr3: 20882803-20886915 Arabidopsis thaliana
AT3G56310 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20885916-20886915 Arabidopsis thaliana
AT3G56310 2.0kb upstream 2.0kb upstream 5113 true Chr3: 20880803-20885915 Arabidopsis thaliana
AT3G56310 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20880803-20882802 Arabidopsis thaliana
AT3G56310 2.0kb downstream 2.0kb downstream 5113 true Chr3: 20882803-20887915 Arabidopsis thaliana
AT3G56310 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20885916-20887915 Arabidopsis thaliana
AT3G56310 5.0kb upstream 5.0kb upstream 8113 true Chr3: 20877803-20885915 Arabidopsis thaliana
AT3G56310 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20877803-20882802 Arabidopsis thaliana
AT3G56310 5.0kb downstream 5.0kb downstream 8113 true Chr3: 20882803-20890915 Arabidopsis thaliana
AT3G56310 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20885916-20890915 Arabidopsis thaliana
AT3G56310 10.0kb upstream 10.0kb upstream 13113 true Chr3: 20872803-20885915 Arabidopsis thaliana
AT3G56310 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20872803-20882802 Arabidopsis thaliana
AT3G56310 10.0kb downstream 10.0kb downstream 13113 true Chr3: 20882803-20895915 Arabidopsis thaliana
AT3G56310 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20885916-20895915 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368440 5261 Brassicaceae View MSA
123828305 5264 Brassicales-Malvales View MSA
124349365 5266 SBM View MSA
124247152 5268 Malvidae View MSA
124073438 5270 Rosid View MSA
123749303 5271 Pentapetalae View MSA
122796981 5272 Eudicot View MSA
122048958 5273 Angiosperm View MSA
121347217 5274 Embryophyte View MSA
123428348 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.978        
cufflinks 13.038        
cufflinks 10.735       Low
cufflinks 17.627       High
cufflinks 13.506        
cufflinks 12.382        

0 Strain