Gene : AT3G56140 A. thaliana TAIR10
Defline:  (1 of 2) PF04187 - Haem-binding uptake, Tiki superfamily, ChaN (Cofac_haem_bdg) Genomic Order:  4666
Name:  ? AT3G56140 Secondary Identifier:  ? PAC:19664847
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G56140 0.5kb upstream 0.5kb upstream 4090 true Chr3: 20828782-20832871 Arabidopsis thaliana
AT3G56140 0.5kb upstream 0.5kb upstream 500 false Chr3: 20828782-20829281 Arabidopsis thaliana
AT3G56140 0.5kb downstream 0.5kb downstream 4090 true Chr3: 20829282-20833371 Arabidopsis thaliana
AT3G56140 0.5kb downstream 0.5kb downstream 500 false Chr3: 20832872-20833371 Arabidopsis thaliana
AT3G56140 1.0kb upstream 1.0kb upstream 4590 true Chr3: 20828282-20832871 Arabidopsis thaliana
AT3G56140 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20828282-20829281 Arabidopsis thaliana
AT3G56140 1.0kb downstream 1.0kb downstream 4590 true Chr3: 20829282-20833871 Arabidopsis thaliana
AT3G56140 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20832872-20833871 Arabidopsis thaliana
AT3G56140 2.0kb upstream 2.0kb upstream 5590 true Chr3: 20827282-20832871 Arabidopsis thaliana
AT3G56140 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20827282-20829281 Arabidopsis thaliana
AT3G56140 2.0kb downstream 2.0kb downstream 5590 true Chr3: 20829282-20834871 Arabidopsis thaliana
AT3G56140 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20832872-20834871 Arabidopsis thaliana
AT3G56140 5.0kb upstream 5.0kb upstream 8590 true Chr3: 20824282-20832871 Arabidopsis thaliana
AT3G56140 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20824282-20829281 Arabidopsis thaliana
AT3G56140 5.0kb downstream 5.0kb downstream 8590 true Chr3: 20829282-20837871 Arabidopsis thaliana
AT3G56140 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20832872-20837871 Arabidopsis thaliana
AT3G56140 10.0kb upstream 10.0kb upstream 13590 true Chr3: 20819282-20832871 Arabidopsis thaliana
AT3G56140 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20819282-20829281 Arabidopsis thaliana
AT3G56140 10.0kb downstream 10.0kb downstream 13590 true Chr3: 20829282-20842871 Arabidopsis thaliana
AT3G56140 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20832872-20842871 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371560 5261 Brassicaceae View MSA
123829237 5264 Brassicales-Malvales View MSA
124336469 5266 SBM View MSA
124241141 5268 Malvidae View MSA
124063708 5270 Rosid View MSA
123737054 5271 Pentapetalae View MSA
122790914 5272 Eudicot View MSA
122041668 5273 Angiosperm View MSA
121345431 5274 Embryophyte View MSA
123380215 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.218        
cufflinks 8.125        
cufflinks 27.859     High  
cufflinks 7.978        
cufflinks 33.441     High High
cufflinks 5.53       Low

0 Strain