Gene : AT3G55410 A. thaliana TAIR10
Defline:  (1 of 2) 1.2.4.2 - Oxoglutarate dehydrogenase (succinyl-transferring) / Oxoglutarate dehydrogenase (lipoamide) Genomic Order:  4585
Name:  ? AT3G55410 Secondary Identifier:  ? PAC:19662865
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5084 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G55410 0.5kb upstream 0.5kb upstream 5100 true Chr3: 20540935-20546034 Arabidopsis thaliana
AT3G55410 0.5kb upstream 0.5kb upstream 500 false Chr3: 20540935-20541434 Arabidopsis thaliana
AT3G55410 0.5kb downstream 0.5kb downstream 5100 true Chr3: 20541435-20546534 Arabidopsis thaliana
AT3G55410 0.5kb downstream 0.5kb downstream 500 false Chr3: 20546035-20546534 Arabidopsis thaliana
AT3G55410 1.0kb upstream 1.0kb upstream 5600 true Chr3: 20540435-20546034 Arabidopsis thaliana
AT3G55410 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20540435-20541434 Arabidopsis thaliana
AT3G55410 1.0kb downstream 1.0kb downstream 5600 true Chr3: 20541435-20547034 Arabidopsis thaliana
AT3G55410 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20546035-20547034 Arabidopsis thaliana
AT3G55410 2.0kb upstream 2.0kb upstream 6600 true Chr3: 20539435-20546034 Arabidopsis thaliana
AT3G55410 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20539435-20541434 Arabidopsis thaliana
AT3G55410 2.0kb downstream 2.0kb downstream 6600 true Chr3: 20541435-20548034 Arabidopsis thaliana
AT3G55410 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20546035-20548034 Arabidopsis thaliana
AT3G55410 5.0kb upstream 5.0kb upstream 9600 true Chr3: 20536435-20546034 Arabidopsis thaliana
AT3G55410 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20536435-20541434 Arabidopsis thaliana
AT3G55410 5.0kb downstream 5.0kb downstream 9600 true Chr3: 20541435-20551034 Arabidopsis thaliana
AT3G55410 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20546035-20551034 Arabidopsis thaliana
AT3G55410 10.0kb upstream 10.0kb upstream 14600 true Chr3: 20531435-20546034 Arabidopsis thaliana
AT3G55410 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20531435-20541434 Arabidopsis thaliana
AT3G55410 10.0kb downstream 10.0kb downstream 14600 true Chr3: 20541435-20556034 Arabidopsis thaliana
AT3G55410 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20546035-20556034 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377331 5261 Brassicaceae View MSA
123838611 5264 Brassicales-Malvales View MSA
124343365 5266 SBM View MSA
124239767 5268 Malvidae View MSA
124067534 5270 Rosid View MSA
123744941 5271 Pentapetalae View MSA
122793820 5272 Eudicot View MSA
122044869 5273 Angiosperm View MSA
121344749 5274 Embryophyte View MSA
123424102 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 52.8     High  
cufflinks 43.88     High  
cufflinks 42.079     High Low
cufflinks 47.976     High  
cufflinks 44.416     High  
cufflinks 55.77     High High

0 Strain