Gene : AT3G55290 A. thaliana TAIR10
Defline:  (1 of 8) 1.1.1.100 - 3-oxoacyl-[acyl-carrier-protein] reductase Genomic Order:  4574
Name:  ? AT3G55290 Secondary Identifier:  ? PAC:19663734
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana FASYN-ELONG-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-5156 Arabidopsis thaliana pathologic  
Athaliana PWY-5971 Arabidopsis thaliana pathologic  
Athaliana PWY-5973 Arabidopsis thaliana pathologic  
Athaliana PWY-5989 Arabidopsis thaliana pathologic  
Athaliana PWY-6282 Arabidopsis thaliana pathologic  
Athaliana PWY-7388 Arabidopsis thaliana pathologic  
Athaliana PWY-7663 Arabidopsis thaliana pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G55290 0.5kb upstream 0.5kb upstream 1686 true Chr3: 20502112-20503797 Arabidopsis thaliana
AT3G55290 0.5kb upstream 0.5kb upstream 500 false Chr3: 20502112-20502611 Arabidopsis thaliana
AT3G55290 0.5kb downstream 0.5kb downstream 1686 true Chr3: 20502612-20504297 Arabidopsis thaliana
AT3G55290 0.5kb downstream 0.5kb downstream 500 false Chr3: 20503798-20504297 Arabidopsis thaliana
AT3G55290 1.0kb upstream 1.0kb upstream 2186 true Chr3: 20501612-20503797 Arabidopsis thaliana
AT3G55290 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20501612-20502611 Arabidopsis thaliana
AT3G55290 1.0kb downstream 1.0kb downstream 2186 true Chr3: 20502612-20504797 Arabidopsis thaliana
AT3G55290 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20503798-20504797 Arabidopsis thaliana
AT3G55290 2.0kb upstream 2.0kb upstream 3186 true Chr3: 20500612-20503797 Arabidopsis thaliana
AT3G55290 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20500612-20502611 Arabidopsis thaliana
AT3G55290 2.0kb downstream 2.0kb downstream 3186 true Chr3: 20502612-20505797 Arabidopsis thaliana
AT3G55290 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20503798-20505797 Arabidopsis thaliana
AT3G55290 5.0kb upstream 5.0kb upstream 6186 true Chr3: 20497612-20503797 Arabidopsis thaliana
AT3G55290 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20497612-20502611 Arabidopsis thaliana
AT3G55290 5.0kb downstream 5.0kb downstream 6186 true Chr3: 20502612-20508797 Arabidopsis thaliana
AT3G55290 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20503798-20508797 Arabidopsis thaliana
AT3G55290 10.0kb upstream 10.0kb upstream 11186 true Chr3: 20492612-20503797 Arabidopsis thaliana
AT3G55290 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20492612-20502611 Arabidopsis thaliana
AT3G55290 10.0kb downstream 10.0kb downstream 11186 true Chr3: 20502612-20513797 Arabidopsis thaliana
AT3G55290 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20503798-20513797 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379286 5261 Brassicaceae View MSA
123835400 5264 Brassicales-Malvales View MSA
124349739 5266 SBM View MSA
124251104 5268 Malvidae View MSA
124062329 5270 Rosid View MSA
123751674 5271 Pentapetalae View MSA
122788273 5272 Eudicot View MSA
122044153 5273 Angiosperm View MSA
123429133 5275 Viridiplantae View MSA
121344803 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.465       Low
cufflinks 7.51       High
cufflinks 2.239        
cufflinks 5.594        
cufflinks 2.075        
cufflinks 4.894        

0 Strain