Gene : PHIP1 A. thaliana TAIR10
Primary Identifier:  ? AT3G55340 Defline:  (1 of 1) KOG0121//KOG0131 - Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) // Splicing factor 3b, subunit 4
Genomic Order:  4578 Name:  ? AT3G55340
Secondary Identifier:  ? PAC:19661923
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G55340 0.5kb upstream 0.5kb upstream 2913 true Chr3: 20515147-20518059 Arabidopsis thaliana
AT3G55340 0.5kb upstream 0.5kb upstream 500 false Chr3: 20515147-20515646 Arabidopsis thaliana
AT3G55340 0.5kb downstream 0.5kb downstream 2913 true Chr3: 20515647-20518559 Arabidopsis thaliana
AT3G55340 0.5kb downstream 0.5kb downstream 500 false Chr3: 20518060-20518559 Arabidopsis thaliana
AT3G55340 1.0kb upstream 1.0kb upstream 3413 true Chr3: 20514647-20518059 Arabidopsis thaliana
AT3G55340 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20514647-20515646 Arabidopsis thaliana
AT3G55340 1.0kb downstream 1.0kb downstream 3413 true Chr3: 20515647-20519059 Arabidopsis thaliana
AT3G55340 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20518060-20519059 Arabidopsis thaliana
AT3G55340 2.0kb upstream 2.0kb upstream 4413 true Chr3: 20513647-20518059 Arabidopsis thaliana
AT3G55340 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20513647-20515646 Arabidopsis thaliana
AT3G55340 2.0kb downstream 2.0kb downstream 4413 true Chr3: 20515647-20520059 Arabidopsis thaliana
AT3G55340 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20518060-20520059 Arabidopsis thaliana
AT3G55340 5.0kb upstream 5.0kb upstream 7413 true Chr3: 20510647-20518059 Arabidopsis thaliana
AT3G55340 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20510647-20515646 Arabidopsis thaliana
AT3G55340 5.0kb downstream 5.0kb downstream 7413 true Chr3: 20515647-20523059 Arabidopsis thaliana
AT3G55340 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20518060-20523059 Arabidopsis thaliana
AT3G55340 10.0kb upstream 10.0kb upstream 12413 true Chr3: 20505647-20518059 Arabidopsis thaliana
AT3G55340 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20505647-20515646 Arabidopsis thaliana
AT3G55340 10.0kb downstream 10.0kb downstream 12413 true Chr3: 20515647-20528059 Arabidopsis thaliana
AT3G55340 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20518060-20528059 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376130 5261 Brassicaceae View MSA
123836538 5264 Brassicales-Malvales View MSA
124348725 5266 SBM View MSA
124243960 5268 Malvidae View MSA
124069375 5270 Rosid View MSA
123748314 5271 Pentapetalae View MSA
122791065 5272 Eudicot View MSA
122048889 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121348554 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.604        
cufflinks 6.845        
cufflinks 3.737        
cufflinks 7.365        
cufflinks 3.063       Low
cufflinks 9.26       High

0 Strain