Gene : OVA1 A. thaliana TAIR10
Primary Identifier:  ? AT3G55400 Defline:  (1 of 1) PTHR11946//PTHR11946:SF89 - ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES // METHIONYL-TRNA SYNTHETASE
Genomic Order:  4584 Name:  ? AT3G55400
Secondary Identifier:  ? PAC:19662493
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana TRNA-CHARGING-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G55400 0.5kb upstream 0.5kb upstream 3937 true Chr3: 20535631-20539567 Arabidopsis thaliana
AT3G55400 0.5kb upstream 0.5kb upstream 500 false Chr3: 20539068-20539567 Arabidopsis thaliana
AT3G55400 0.5kb downstream 0.5kb downstream 3937 true Chr3: 20535131-20539067 Arabidopsis thaliana
AT3G55400 0.5kb downstream 0.5kb downstream 500 false Chr3: 20535131-20535630 Arabidopsis thaliana
AT3G55400 1.0kb upstream 1.0kb upstream 4437 true Chr3: 20535631-20540067 Arabidopsis thaliana
AT3G55400 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20539068-20540067 Arabidopsis thaliana
AT3G55400 1.0kb downstream 1.0kb downstream 4437 true Chr3: 20534631-20539067 Arabidopsis thaliana
AT3G55400 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20534631-20535630 Arabidopsis thaliana
AT3G55400 2.0kb upstream 2.0kb upstream 5437 true Chr3: 20535631-20541067 Arabidopsis thaliana
AT3G55400 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20539068-20541067 Arabidopsis thaliana
AT3G55400 2.0kb downstream 2.0kb downstream 5437 true Chr3: 20533631-20539067 Arabidopsis thaliana
AT3G55400 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20533631-20535630 Arabidopsis thaliana
AT3G55400 5.0kb upstream 5.0kb upstream 8437 true Chr3: 20535631-20544067 Arabidopsis thaliana
AT3G55400 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20539068-20544067 Arabidopsis thaliana
AT3G55400 5.0kb downstream 5.0kb downstream 8437 true Chr3: 20530631-20539067 Arabidopsis thaliana
AT3G55400 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20530631-20535630 Arabidopsis thaliana
AT3G55400 10.0kb upstream 10.0kb upstream 13437 true Chr3: 20535631-20549067 Arabidopsis thaliana
AT3G55400 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20539068-20549067 Arabidopsis thaliana
AT3G55400 10.0kb downstream 10.0kb downstream 13437 true Chr3: 20525631-20539067 Arabidopsis thaliana
AT3G55400 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20525631-20535630 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362064 5261 Brassicaceae View MSA
123831392 5264 Brassicales-Malvales View MSA
124342754 5266 SBM View MSA
124242853 5268 Malvidae View MSA
124065458 5270 Rosid View MSA
123752968 5271 Pentapetalae View MSA
122787831 5272 Eudicot View MSA
122046373 5273 Angiosperm View MSA
121347151 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.935        
cufflinks 5.137        
cufflinks 14.701       High
cufflinks 5.448        
cufflinks 12.046        
cufflinks 4.865       Low

0 Strain